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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pgl006721 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family | Dof | ||||||||
| Protein Properties | Length: 228aa MW: 24488.4 Da PI: 7.5316 | ||||||||
| Description | Dof family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-Dof | 45.4 | 1.7e-14 | 2 | 30 | 34 | 62 |
zf-Dof 34 kaCrryWtkGGalrnvPvGggrrknkkss 62
k+CrryWtkGG+lr vPvGgg+rkn k++
Pgl006721 2 KTCRRYWTKGGSLRSVPVGGGCRKNSKRN 30
89***********************9875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF02701 | 1.2E-9 | 2 | 28 | IPR003851 | Zinc finger, Dof-type |
| ProDom | PD007478 | 3.0E-6 | 2 | 23 | IPR003851 | Zinc finger, Dof-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 228 aa Download sequence Send to blast |
XKTCRRYWTK GGSLRSVPVG GGCRKNSKRN NSSNNNGKRS NGEACSSATG SDQLSPSLGG 60 VSNDCKYYNG DGEELIGINY VNSLRQVDHE AAFAGCSINS GVYGIQANDH QSSQSFQPYH 120 LPTALQSLQG SLIQAPNGFN QAANRGDLGL VQQQAAGAVS YDREAYHPYI NMSLDHSDGH 180 SRAPQQHKSN NIIENPPQGL VYEGGYWNGG VWPDLSAYGL SNINPNSM |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Pgl.5847 | 0.0 | root | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A9NNI1 | 1e-163 | A9NNI1_PICSI; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G62940.1 | 9e-09 | Dof family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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