PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl006727
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 228aa    MW: 25775.1 Da    PI: 8.6195
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55340290PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-31415PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.49.8e-33181102103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d+++++++sw +++n+fvv+ ++ef+  vLp yF h+nf+SFvRQLn+YgF+k+ + +          eF+++ F+kg+++ll++i+
     Pgl006727  18 FLVKTYRLVDDPSTDHIVSWGDHKNTFVVWRPKEFSACVLPCYFNHTNFSSFVRQLNTYGFRKIVRGR---------CEFANDLFRKGQTHLLSHIQ 105
                   9***************************************************************9988.........67****************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
     Pgl006727 106 RRKPS 110
                   **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.7E-5014107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.98E-3316107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.2E-3616107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.9E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-171841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-175668IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-176981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGMDGSVRDA GRLVASPFLV KTYRLVDDPS TDHIVSWGDH KNTFVVWRPK EFSACVLPCY  60
FNHTNFSSFV RQLNTYGFRK IVRGRCEFAN DLFRKGQTHL LSHIQRRKPS STSTTQASQI  120
EYEKSSSSLI PYSLSTVQDS DVPAAAPSLS EENEILRRNN SLLLSEIARL QNICSRDFTL  180
FSRQNTRNPP SIDMDRSKVD NASPTSSMTE VAEEINMTPP KLFGVPLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-201810729129Heat shock factor protein 1
5d5v_B2e-201810729129Heat shock factor protein 1
5d5v_D2e-201810729129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.209660.0cone| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020701812.25e-52heat stress transcription factor B-4b-like
TrEMBLH9WK881e-83H9WK88_PINTA; Uncharacterized protein (Fragment)
STRINGGSMUA_Achr9P15370_0019e-53(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-52heat shock transcription factor B4