PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl006791
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 225aa    MW: 24699.8 Da    PI: 7.5582
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55332659PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-10624PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260145.21.9e-4581071100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrrkC+ +Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA+ar++dPvyG+vg i+ lq+q++ql++el+++++e
  Pgl006791   8 PCAACKFLRRKCTLECVFAPYFPPDQPQKFANVHKIFGASNVTKLLNELHPHQREDAVNSLAYEADARVKDPVYGCVGAISILQHQVKQLQTELHHARSE 107
                7**********************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.4567108IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-448105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MASSSNSPCA ACKFLRRKCT LECVFAPYFP PDQPQKFANV HKIFGASNVT KLLNELHPHQ  60
REDAVNSLAY EADARVKDPV YGCVGAISIL QHQVKQLQTE LHHARSELSK YINAGIAIPP  120
MGAAPGIGMG LAGSSRDQIF RDQNIIESHI SRDHILRASN YDQTDIVRLS GPGYDPNYLA  180
ISGSLAQAQA QAQAQVFNPY PRTGSSSDER ACISPPYLHP EKREE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-5741117114LOB family transfactor Ramosa2.1
5ly0_B2e-5741117114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403438.16e-70LOB domain-containing protein 6-like
TrEMBLA0A443NSI21e-73A0A443NSI2_9MAGN; LOB domain-containing protein 6-like protein
STRINGPP1S170_78V6.12e-69(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-59LBD family protein