PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl006856
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25584.9 Da    PI: 10.0311
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55349577PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-44302PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-311059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               rienk+nrqvtfskRrng++KKA+ELS+LCdaeva+i+fs++gklye+ss
  Pgl006856 10 RIENKINRQVTFSKRRNGLMKKASELSILCDAEVALIVFSNRGKLYEFSS 59
               8***********************************************96 PP
2K-box67.25.6e-2377153884
      K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                + +++ +++++ el++Lk+++e+L+r  RhllGedLesLs+keLqqLeqqLe++lk++ skK++ll    + l kk 
  Pgl006856  77 QDNNRSTQTSNLELTQLKEKVESLERWRRHLLGEDLESLSVKELQQLEQQLEEGLKQVTSKKEQLLEGINKSLHKKF 153
                3456678999********************************************************98888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.983161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-33280IPR002100Transcription factor, MADS-box
CDDcd002659.18E-44275No hitNo description
PRINTSPR004042.2E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-313859IPR002100Transcription factor, MADS-box
PfamPF014863.9E-1880156IPR002487Transcription factor, K-box
PROSITE profilePS5129712.93583173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGRGRVQLRR IENKINRQVT FSKRRNGLMK KASELSILCD AEVALIVFSN RGKLYEFSSS  60
SMSKILERHR KCSNSVQDNN RSTQTSNLEL TQLKEKVESL ERWRRHLLGE DLESLSVKEL  120
QQLEQQLEEG LKQVTSKKEQ LLEGINKSLH KKFSGLEGQY PCDQYPIQIF RGSWHSTAGN  180
YDTQVYSPHC NPTLHIGRPS APSGSTTTGQ RQSRNYEAQG WMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-22169169MEF2C
5f28_B9e-22169169MEF2C
5f28_C9e-22169169MEF2C
5f28_D9e-22169169MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.225630.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272608.13e-61PREDICTED: MADS-box transcription factor 6-like
SwissprotQ8LLR11e-58MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A1I9ZKV33e-73A0A1I9ZKV3_GINBI; MADS-box transcription factor 6
STRINGXP_010272608.11e-60(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.16e-44MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]