PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl006996
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 217aa    MW: 23935 Da    PI: 9.3778
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55338213PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-39432PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.8e-213383155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a+++a+++l+g
  Pgl006996 33 THFRGVRKRP-WGRFAAEIRDpWK----KTRLWLGTFDTAEEAARAYDNAARNLRG 83
               589*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-133383IPR001471AP2/ERF domain
CDDcd000186.90E-303391No hitNo description
Gene3DG3DSA:3.30.730.101.5E-313491IPR001471AP2/ERF domain
PROSITE profilePS5103222.7873491IPR001471AP2/ERF domain
SMARTSM003802.4E-353497IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-223492IPR016177DNA-binding domain
PRINTSPR003676.9E-113546IPR001471AP2/ERF domain
PRINTSPR003676.9E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAVDTMQMAR VGMKMEIGVG DCEETASYAV KGTHFRGVRK RPWGRFAAEI RDPWKKTRLW  60
LGTFDTAEEA ARAYDNAARN LRGPKAKTNF ALQGDSTNSA ILFNNGVTRA INVQRQEWPV  120
FHSKQEPCVS SNSCAAPTAL ASRLDNDRVS SCGASQSLAV ENQTPPTKKQ KLLFGTHLFE  180
SSHISQLRED AVTCRSSRRQ APLLLDLNLP PAANDVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-213196268ATERF1
3gcc_A1e-213196268ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.170710.0needle| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278126.13e-39PREDICTED: ethylene-responsive transcription factor 9-like
TrEMBLE0ZH201e-103E0ZH20_PICSI; Ethylene-responsive element binding factor-like protein
STRINGXP_010278126.11e-38(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-26erf domain protein 9