PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007029
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 215aa    MW: 24252.7 Da    PI: 8.4661
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55342774PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-10868PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-122264754
               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 ErrRR+++N+ + +Lr l+P+ +      K++Ka+iL  A+eY+++L
  Pgl007029 22 VSERRRRQKMNKLLYTLRALVPNiS------KMDKASILGDAIEYVNEL 64
               57*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.85E-131369No hitNo description
SuperFamilySSF474596.15E-181479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.5711564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-162170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-172178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-102264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MESTDQPSML RYKKPKLSKN VVSERRRRQK MNKLLYTLRA LVPNISKMDK ASILGDAIEY  60
VNELKQQVER AECDVQSTNV SSQSAEAPVD ETNSLGLRLD AANRYGSDRK YHVQVETRVL  120
GESIAELRIR CKKECGILFH LTRALESLPF RLKNVSFTTL DDYLLLLNVV LQAEAECFPA  180
TGDCGVRQSI EDSFGKQGLI LTSGNSNGHS WQELK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-162074963Transcription factor MYC2
5gnj_B1e-162074963Transcription factor MYC2
5gnj_E1e-162074963Transcription factor MYC2
5gnj_F1e-162074963Transcription factor MYC2
5gnj_G1e-162074963Transcription factor MYC2
5gnj_I1e-162074963Transcription factor MYC2
5gnj_M1e-162074963Transcription factor MYC2
5gnj_N1e-162074963Transcription factor MYC2
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.224040.0cone| stem| vegetative bud
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.12e-22bHLH family protein