PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007095
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 213aa    MW: 23111.3 Da    PI: 10.1246
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S48364110PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-34842PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-201867255
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr ++ +gr++AeIrd ++    + r +lg+f+taeeAa+a++ a+ +l+g
  Pgl007095 18 HFRGVRKRP-WGRYAAEIRDpWK----KVRLWLGTFDTAEEAARAYDTAAISLRG 67
               69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.68E-271876No hitNo description
Gene3DG3DSA:3.30.730.103.3E-311875IPR001471AP2/ERF domain
SMARTSM003808.7E-391881IPR001471AP2/ERF domain
PfamPF008471.3E-121867IPR001471AP2/ERF domain
PROSITE profilePS5103223.1961875IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-221877IPR016177DNA-binding domain
PRINTSPR003671.1E-101930IPR001471AP2/ERF domain
PRINTSPR003671.1E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
VMAPSNNRRD DNGERGVHFR GVRKRPWGRY AAEIRDPWKK VRLWLGTFDT AEEAARAYDT  60
AAISLRGPKA KTNFAYSSPS SSSSLHNNQS SSQNSSTVES WPSAAPVTRS GDLELHASFL  120
PRIGVSTGRR GFNGGNPRSE RRRSLSEKNG GRKAEGAEAR TALSDSDSSS SAILDGDAQA  180
PPPPPAAKRP FLLDLNLPPP LDDDDEQPQQ IGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-211174271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.72250.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ7H2D86e-93J7H2D8_PINTB; Transcription factor 1 (Fragment)
TrEMBLJ7H5K84e-93J7H5K8_9SPER; Transcription factor 1 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.15e-20ERF domain protein 12