PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007127
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 212aa    MW: 24168 Da    PI: 9.3635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S25771188PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-915PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-132475255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
               +r+h+++Er+RR++++  f++Lr+llP+ +     +K + +e + +Av+Y+ +Lq
  Pgl007127 24 KRSHKMIERQRRKEMKVFFSRLRSLLPEeN---LRGKRTVSEQVLEAVNYVGHLQ 75
               689*************************66...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.9922274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-132391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-112491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-92479No hitNo description
PfamPF000106.3E-102475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-52880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
XSNSSPPTDG QSWNILPGSA TADKRSHKMI ERQRRKEMKV FFSRLRSLLP EENLRGKRTV  60
SEQVLEAVNY VGHLQRKIED LSAQREKMKV NSDQNAKVSF EKFWDNTPPF GGSDREYPAV  120
KINSVGSGVQ ICMNSLEHEI VYSDILLALE EGGLEVVSAA SSVINNRVYH TIHAKVFDLN  180
TFNIHTLYQK LWHLISTHHT KFQDLRTTDA RA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12334KRSHKMIERQRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH51e-133B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.19e-23bHLH family protein