PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007128
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family SBP
Protein Properties Length: 212aa    MW: 24076.3 Da    PI: 9.1349
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40850956PU_refUnigeneView CDS
PUT-175a-Picea_glauca-19675PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.85.8e-4289165177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +Cqve+C+adl++akey+rrh+vCe+hska vvlv gl+qrfCqqCsrfh l+efDe+krsCrrrLa+hnerrrk+ 
  Pgl007128  89 ACQVEKCAADLADAKEYYRRHRVCEQHSKARVVLVLGLQQRFCQQCSRFHVLEEFDEAKRSCRRRLAGHNERRRKTP 165
                5*************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.5E-3582151IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.00987164IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.89E-3988167IPR004333Transcription factor, SBP-box
PfamPF031106.9E-3290163IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
TDTLLIHIAP PSLSMKNPEL PVEMDEVEVK VDIQSTNASA DEPRTAKRQG FELARIPEDP  60
ASKPTALSSP KKPKAASSSS SSPRAQPPAC QVEKCAADLA DAKEYYRRHR VCEQHSKARV  120
VLVLGLQQRF CQQCSRFHVL EEFDEAKRSC RRRLAGHNER RRKTPSDSSV DRLDSNHHLN  180
DNWLRHMKES DKMTMVLERN TTAKVCKEIK NH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3576163184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.38400.0stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398957.23e-43PREDICTED: squamosa promoter-binding protein 1-like
SwissprotQ387411e-39SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA9NSA81e-143A9NSA8_PICSI; Uncharacterized protein
STRINGGSMUA_Achr4P23650_0011e-42(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.21e-39squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]