PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007150
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24247.9 Da    PI: 8.7304
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S59016453PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-22099PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.6e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+i++ + rqvtfskR++gi+KKA+ELSvLCdaevav+ifs+tg+lyey+s
  Pgl007150  9 KKIDDVTSRQVTFSKRKAGIFKKAHELSVLCDAEVAVLIFSNTGRLYEYAS 59
               689**********************************************86 PP
2K-box61.33.8e-21861731198
      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 ++ +  q+ ++ L+++++ Lqr qR+++Ge+L  L++ eL+ Le+ +e ++ k+R+++n++ le+i +l+ ke+ l  en++L+k+l
  Pgl007150  86 VENKNPIQEGIEILRQKLRALQRLQRNMMGEELALLKVGELHDLEHTIECAILKVRARQNQIQLEKIANLRFKEQLLIGENEQLQKML 173
                45556789999**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.085161IPR002100Transcription factor, MADS-box
CDDcd002656.09E-42276No hitNo description
SuperFamilySSF554551.83E-31275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-28323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-1788173IPR002487Transcription factor, K-box
PROSITE profilePS5129712.48989180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRGKIEIKK IDDVTSRQVT FSKRKAGIFK KAHELSVLCD AEVAVLIFSN TGRLYEYASS  60
RCMERTIERY EKCTKAINCP SSEHNVENKN PIQEGIEILR QKLRALQRLQ RNMMGEELAL  120
LKVGELHDLE HTIECAILKV RARQNQIQLE KIANLRFKEQ LLIGENEQLQ KMLLEEAQRS  180
LGLRPTSLIQ TDIITSPTVI MNPYEGFFXW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-20170169Myocyte-specific enhancer factor 2B
1tqe_Q9e-20170169Myocyte-specific enhancer factor 2B
1tqe_R9e-20170169Myocyte-specific enhancer factor 2B
1tqe_S9e-20170169Myocyte-specific enhancer factor 2B
6c9l_A9e-20170169Myocyte-specific enhancer factor 2B
6c9l_B9e-20170169Myocyte-specific enhancer factor 2B
6c9l_C9e-20170169Myocyte-specific enhancer factor 2B
6c9l_D9e-20170169Myocyte-specific enhancer factor 2B
6c9l_E9e-20170169Myocyte-specific enhancer factor 2B
6c9l_F9e-20170169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.77890.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373424.19e-49MADS-box protein GGM13-like isoform X1
RefseqXP_024373432.18e-49MADS-box protein GGM13-like isoform X2
TrEMBLS5MKE41e-150S5MKE4_PICAB; DAL21 protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-42AGAMOUS-like 8