PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007196
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 208aa    MW: 23297.2 Da    PI: 10.678
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40906770PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-43745PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-0895143348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v  +G g+W+ I +        Rt  ++k++w+++l
        Pgl007196  95 SWTLHEVVKLVEGVSHFGVGRWSDIKKLAFsssVYRTSVDLKDKWRNLL 143
                      7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.78988147IPR017930Myb domain
SuperFamilySSF466898.22E-1690151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-1290148IPR009057Homeodomain-like
SMARTSM007173.1E-892145IPR001005SANT/Myb domain
CDDcd116602.53E-1994144No hitNo description
PfamPF002494.0E-695143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
XSGRDANLVK QSLCVPAAHY SSDTANMKQI VPFGSSQNIV HDNKEIKEQA LVSVPPDRNY  60
VLEPSNSDSL DDISYDYLKT IRTAKGGIRR KHHRSWTLHE VVKLVEGVSH FGVGRWSDIK  120
KLAFSSSVYR TSVDLKDKWR NLLRASYTQL QTNKQAVNRR NHASVPIPAA ILVHVRELAA  180
TQSRAICAPS SNSSLSRSGR TVHKRHIM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020526468.11e-53uncharacterized protein LOC18422773 isoform X1
RefseqXP_020526475.11e-53uncharacterized protein LOC18422773 isoform X3
TrEMBLW1NHA93e-52W1NHA9_AMBTC; Uncharacterized protein
STRINGERM948615e-53(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.14e-34TRF-like 6