PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007256
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YA
Protein Properties Length: 205aa    MW: 22420.3 Da    PI: 7.345
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55347783PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-3365PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.81.6e-32107163158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy +Il+RRq+Rak+e+e+kl +k+rkpylheSRh hAl+R+Rg+gGrF
  Pgl007256 107 EEPVYVNAKQYYGILRRRQSRAKAESENKL-IKNRKPYLHESRHLHALKRARGCGGRF 163
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-37105166IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.292106166IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-27108163IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.5E-23109131IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860111131IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.5E-23140163IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MENTPTHTVS GIDGSAPDEQ QPQADPVQQE APPPGMIPPP AMTLLPPEFV MPHTQLELGQ  60
AMVRAAYPYP DPYFGGIVAA YGPQAVIHPH MLGVPHAGLP LPSDAVEEPV YVNAKQYYGI  120
LRRRQSRAKA ESENKLIKNR KPYLHESRHL HALKRARGCG GRFLNAKKQD EVSQENNSNG  180
NIVHVPSVDK PDAEKKSSSA QNTDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-22106170165NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.6910.0vegetative bud
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020268973.16e-71nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_020268974.16e-71nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_020268975.16e-71nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_020268976.16e-71nuclear transcription factor Y subunit A-7 isoform X1
SwissprotQ84JP15e-49NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A0D6R4Z21e-66A0A0D6R4Z2_ARACU; Uncharacterized protein
STRINGPP1S42_174V6.17e-67(Physcomitrella patens)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]