PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007446
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GATA
Protein Properties Length: 194aa    MW: 21462.9 Da    PI: 10.5746
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55351565PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-13196PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.31.2e-14106142135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +Cg  +  Tp++Rrgp g+++LCnaCGl+++ kg+
  Pgl007446 106 CLHCGIGErlTPMMRRGPAGPRSLCNACGLMWANKGV 142
                899*999999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101713.0963173IPR010402CCT domain
PfamPF062037.1E-173173IPR010402CCT domain
SMARTSM004012.6E-9100153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-12102161No hitNo description
Gene3DG3DSA:3.30.50.103.1E-15104147IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.15E-11105148No hitNo description
PfamPF003207.5E-13106142IPR000679Zinc finger, GATA-type
PROSITE patternPS003440106133IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.735116156IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
XPPGLSGMPI HGHHHQKVLA DIPQRLNQPQ RIASLTRFRE KRKERCFDKK IRYSVRKEVA  60
LRMQRNKGQF TSTKSNPEDL GSSAAKWDPS QGWPPDSNGT QQEVVCLHCG IGERLTPMMR  120
RGPAGPRSLC NACGLMWANK GVLRDLSKTP SSLGSQNQPS SSHEQNDGRA GSHETEVGDR  180
NHIVSLPTNG HISS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.39380.0stem| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888995.12e-72GATA transcription factor 28-like
RefseqXP_021888996.12e-72GATA transcription factor 28-like
SwissprotQ8H1G03e-62GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A0C9RYG71e-111A0A0C9RYG7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_3969_1829 transcribed RNA sequence
STRINGPP1S226_47V6.14e-68(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.25e-64ZIM-LIKE 2