PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl007687

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 181aa MW: 20244.7 Da PI: 6.1518

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55349498	PU_ref	Unigene	View CDS
PUT-175a-Picea_glauca-7259	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118	5.5e-37	12	99	13	100
DUF260 13 akdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 akdCv+apyfpa+qp+kfa vhk+FGasnv+k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i+ lqqq+++l+ +la+ ++e Pgl007687 12 AKDCVFAPYFPADQPQKFASVHKVFGASNVSKMLQELPVHQRADAVSSMVYEANARVRDPVYGCVGAISYLQQQVANLQMQLARSQAE 99 589********************************************************************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.873	1	100	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-36	13	97	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MRLLQAATPT LAKDCVFAPY FPADQPQKFA SVHKVFGASN VSKMLQELPV HQRADAVSSM 60 VYEANARVRD PVYGCVGAIS YLQQQVANLQ MQLARSQAEI MCMHIQQQEA LLSDSTDNID 120 SKQAIMGTMN DHQLHYDQIH ANNYHHPSDC STSSHDSPQQ LLTHAQTVYD SLDIREALWT 180 S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-40	14	101	25	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-40	14	101	25	112	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.13168	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011624484.1	1e-58	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	3e-53	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2G5D2R7	3e-55	A0A2G5D2R7_AQUCA; Uncharacterized protein
TrEMBL	I1LLS0	3e-55	I1LLS0_SOYBN; Uncharacterized protein
STRING	Aquca_030_00227.1	5e-56	(Aquilegia coerulea)
STRING	GLYMA11G29450.1	5e-56	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-55	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]