PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007797
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family DBB
Protein Properties Length: 174aa    MW: 19215.5 Da    PI: 7.4228
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55346445PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-40656PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.6e-08434536
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                C+ +e   +q+fC  ++  lC++C ++ H g
  Pgl007797  4 LCDSCEAAAAQFFCAADEAALCAKCDEKVH-G 34
               7******99*******************99.5 PP
2zf-B_box19.81.6e-065391337
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
               +++C+ +e   + l+C  +++ lC +C +e H g    H
  Pgl007797 53 APRCDICETAAAFLHCSIDGSSLCLQCDMEVHVGgkrtH 91
               589******99*********************6544445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.0E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.566147IPR000315B-box-type zinc finger
PfamPF006431.3E-6342IPR000315B-box-type zinc finger
SMARTSM003361.5E-65196IPR000315B-box-type zinc finger
CDDcd000212.88E-45484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MRTLCDSCEA AAAQFFCAAD EAALCAKCDE KVHGCNKLAG RHVRLQLRES WSAPRCDICE  60
TAAAFLHCSI DGSSLCLQCD MEVHVGGKRT HVRYLLLGQR VELPNGNHIP NGNHIRDEQG  120
NPKTMDTARA WQNKYCQEHR SNGDPSHKTN ISNGNIHNAV SCNKENVQSN GQKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.33760.0needle| root| somatic embryo| stem| vegetative bud
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024517934.14e-55B-box zinc finger protein 18 isoform X3
RefseqXP_024540627.14e-55B-box zinc finger protein 18 isoform X3
SwissprotC0SVM55e-51BBX19_ARATH; B-box zinc finger protein 19
TrEMBLB8LP581e-127B8LP58_PICSI; Uncharacterized protein
STRINGPP1S207_121V6.15e-53(Physcomitrella patens)
STRINGEFJ105483e-54(Selaginella moellendorffii)
STRINGEFJ192923e-54(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-41DBB family protein