PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007854
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 171aa    MW: 19185.2 Da    PI: 8.6034
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55349226PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-33355PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF892.4e-28956148
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
               k+ien+  rqvtf+kRr g++KKA+ELSvLCdaeva+i+fss+gklye
  Pgl007854  9 KKIENSVHRQVTFCKRRGGLMKKAYELSVLCDAEVALIVFSSRGKLYE 56
               68*********************************************9 PP
2K-box63.77e-226313033100
      K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +++R l+Ge+L+s +++eL+qLe  L+k+++++RskKnel+le+i++lq+ke+ l+  n++L+ kl+e
  Pgl007854  63 NSNRYLMGEGLGSVTFEELNQLECCLQKGINQVRSKKNELMLEEIKTLQNKEHTLRMSNMMLQGKLDE 130
                5679***********************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.099161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-28162IPR002100Transcription factor, MADS-box
CDDcd002653.93E-39272No hitNo description
PRINTSPR004045.2E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251056IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.69144134IPR002487Transcription factor, K-box
PfamPF014867.6E-1962128IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGRGKIEIKK IENSVHRQVT FCKRRGGLMK KAYELSVLCD AEVALIVFSS RGKLYELGTS  60
NNNSNRYLMG EGLGSVTFEE LNQLECCLQK GINQVRSKKN ELMLEEIKTL QNKEHTLRMS  120
NMMLQGKLDE CTNGKGITSL LTHGFTTLLP NQHVPCGFDL STHSLSSNVE M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19161161MEF2C
5f28_B3e-19161161MEF2C
5f28_C3e-19161161MEF2C
5f28_D3e-19161161MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.226140.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds (Ref.1). Expressed in endotesta cell layer of developing seeds (PubMed:28369525). {ECO:0000269|PubMed:28369525, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}.
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273432.12e-49PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_010273433.12e-49PREDICTED: floral homeotic protein AGAMOUS isoform X2
SwissprotA0A217EJJ01e-45AG11S_VITVI; Agamous-like MADS-box protein AGL11
SwissprotF6I4571e-45AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLS5MKD92e-99S5MKD9_PICAB; DAL5 protein (Fragment)
STRINGXP_010273432.18e-49(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.21e-48MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]