PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007893
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 169aa    MW: 19346.1 Da    PI: 4.592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55346822PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-9249270PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.6e-09848446
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     WT  E  l+++a  ++G++ + +I++++   Rt+ qc+ ++ k
        Pgl007893  8 WTDNERCLFINALSEYGKD-FQSISSHVH-SRTEDQCRTFFCK 48
                     *****************99.*********.********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129314.884354IPR017884SANT domain
SuperFamilySSF466899.72E-12454IPR009057Homeodomain-like
SMARTSM007172.4E-7452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-7648IPR009057Homeodomain-like
PfamPF002493.4E-8748IPR001005SANT/Myb domain
CDDcd001671.45E-6848No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
XEDNNTDWTD NERCLFINAL SEYGKDFQSI SSHVHSRTED QCRTFFCKSR KVLKLDELVS  60
QEQVTEVQRN SAADLNRGHS EMHVDDMSLS NVPTSDKTAE TYKSQVMDAA RQNARTEIGL  120
DEAAQVCHPH NIIEREDCKV AQDEEIELEE LWKICKRNLA VAPMEASTH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.45970.0needle| root| somatic embryo| stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.12e-13MYB family protein