PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007925
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 166aa    MW: 18776.2 Da    PI: 4.4782
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S25732150PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-23830PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.91.8e-2924118599
     DUF260   5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                Ck+ +++C ++C++   f++++ +kf ++h++FGa nv+kl+++lp ++r da++s+vyeA ar++dPv G+vg i+klq q++ l++++ ++++
  Pgl007925  24 CKMEQKDCLENCTILYRFASNDLQKFSILHQVFGACNVIKLVQDLPSDQRVDAINSMVYEASARLQDPVFGCVGKIQKLQLQISDLQSQITATES 118
                *****************************************************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.97619120IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-2823116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MQMMSNSKEK PLTQSSSAAF HDHCKMEQKD CLENCTILYR FASNDLQKFS ILHQVFGACN  60
VIKLVQDLPS DQRVDAINSM VYEASARLQD PVFGCVGKIQ KLQLQISDLQ SQITATESTI  120
QKIRSQRTQL LDCIPGFKNR DNPTICTSLN EDDEEDQDLL DSDLID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-27131204111LOB family transfactor Ramosa2.1
5ly0_B2e-27131204111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.115400.0vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P1U32e-64A9P1U3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-27LOB domain-containing protein 11