PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl007932
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 166aa    MW: 18144.2 Da    PI: 4.2605
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S25722582PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-43297PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.53e-2634124999
     DUF260   9 rrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +++C ++C+l   f++++ +kfa+++++FGa nv++l+++lp ++r +a++s+vyeA ar++dP  G++g+i++lq+ql+ l++++ ++++
  Pgl007932  34 QNECLENCTLLYQFASNDLHKFAILQQVFGACNVVQLVQDLPSDQRVEAIDSMVYEASARLEDPAFGCTGIIHQLQRQLSDLHSQITTTQA 124
                569**********************************************************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.39825126IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-2434123IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGGDMDGSKI QKQKECLEKP SIGADADDSK LEKQNECLEN CTLLYQFASN DLHKFAILQQ  60
VFGACNVVQL VQDLPSDQRV EAIDSMVYEA SARLEDPAFG CTGIIHQLQR QLSDLHSQIT  120
TTQATIQKVR SQQAALLASV AGFNTAGEDV DKFDPTSSAS PKDYDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-21201196104LOB family transfactor Ramosa2.1
5ly0_B5e-21201196104LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.38700.0cone| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P1U35e-57A9P1U3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.15e-30LOB domain-containing protein 11