PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl008405
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 133aa    MW: 14723.7 Da    PI: 10.6427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S25734782PU_refUnigeneView CDS
gnl|UG|Pgl#S25735695PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-203181155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++++GVr ++ +gr++AeIrdp +   ++r++lg+f+taeeAa+a+++a+++l+g
  Pgl008405 31 THFRGVRKRP-WGRFAAEIRDPLK---KTRVWLGTFDTAEEAARAYDNAARNLRG 81
               589*******.**********743...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-143181IPR001471AP2/ERF domain
CDDcd000181.57E-293188No hitNo description
SMARTSM003801.9E-373295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-323289IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-223290IPR016177DNA-binding domain
PROSITE profilePS5103222.4713289IPR001471AP2/ERF domain
PRINTSPR003671.9E-113344IPR001471AP2/ERF domain
PRINTSPR003671.9E-115571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MVVYAMQMAR VGVKMEIGGC EEEASSPVKE THFRGVRKRP WGRFAAEIRD PLKKTRVWLG  60
TFDTAEEAAR AYDNAARNLR GVKAKTNFLL SPHHDDSTKS SRSAALATLS SRSAVLLSNS  120
RTSAASVQIQ DQW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-222990264ATERF1
3gcc_A4e-222990264ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278126.11e-35PREDICTED: ethylene-responsive transcription factor 9-like
TrEMBLA9NMP14e-51A9NMP1_PICSI; Uncharacterized protein
STRINGXP_010278126.14e-35(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.16e-24ERF domain protein 12