PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl008817
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 753aa    MW: 80205.1 Da    PI: 8.568
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55337158PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-28957PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11511556555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR+ri +++  L+el+P++      K +Ka++L + ++Y+k Lq
  Pgl008817 511 HSIAERLRRERIAERMKALQELVPNS-----NKTDKASMLDEIIDYVKFLQ 556
                99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-17504565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.453506555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-16508565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.84E-13510560No hitNo description
PfamPF000109.2E-9511556IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-14512561IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
XMGSLSIPTY SQILKNIIKI STSAEPMHIY VGLLVDLVNF TTNGAGASNL LNMAKQVADP  60
LSLLRLKEDG XKSTTLFQVS KFYKDDQKPA VGPATEQFAG FNINGKHQCS APIISISAQA  120
ASECKSFKFS KQAAGFESRD CEIIRRGRIP LRLDILASLV NFLVDMQPST SMLGTGPVQG  180
VSSVTACLSS SPQVGLQEQM HSQQHQINNQ QQHFSSQFDQ TNQPHQNMDD FLEQMLFMPQ  240
WSDVAGGKSP WEFNPNNAPQ GNNASNNNNS PQNLQSNTQK LFTMSLMPPG IGSQGLNSQE  300
NDGHAGEHMQ YSYDQSPFLA NRLRQHQLSG NSSINQTPNQ VSQGINETNT SPGRSMVLQL  360
STGNASASQL LASMGNSPRG TAVMTRSPST GGSCNGSDGG MLPLPLSLGQ AGKSGDMNEP  420
GSREEIEASF KSVNNARDSN LGGLFQPFAV SPRGVRPTGQ NFHAQPGQVP LQGYGGMPQP  480
QHQNPPPTGV GAAPPVRPRV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNSNKTD  540
KASMLDEIID YVKFLQLQVK VLSMSRLGGA GAVAPLVADI PAEGANAPQG TRTNGSQNSS  600
PDGLALTERQ VAKLMEEDMG TAMQYLQGKG LCLMPISLAS AINNSGSRPQ APSTPSLQGL  660
LASNVNDRQV LEPSSNSALS ALTSTSMTIQ PSISSPGSGI TEQGDNAHKA GNGTRNPKDS  720
REANSVTKSN GIGPALSKNA VKGEDEPQRR SGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1515520RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.32330.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857186.21e-100transcription factor bHLH66
RefseqXP_011628047.11e-100transcription factor bHLH66
RefseqXP_020530898.11e-100transcription factor bHLH66
RefseqXP_020530899.11e-100transcription factor bHLH66
TrEMBLU5DE192e-99U5DE19_AMBTC; Uncharacterized protein
STRINGERN186531e-100(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-45LJRHL1-like 1