PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl008828

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YC

Protein Properties

Length: 717aa MW: 79814.4 Da PI: 9.2373

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55341728	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-2725	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	158.6	9.8e-50	572	665	8	101
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 +++e+a+dfk h+lPlarikki+kadedvkmisaeaPv+++kace+fileltlrsw+ +eenkrrtl+k+diaaa+ rtdifdflvdivprde Pgl008828 572 REVEQAQDFKTHSLPLARIKKIMKADEDVKMISAEAPVVFAKACEMFILELTLRSWIYTEENKRRTLQKNDIAAAIGRTDIFDFLVDIVPRDEF 665 569****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.38E-31	565	656	IPR009072	Histone-fold
Pfam	PF00808	9.9E-21	584	647	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.4E-36	585	662	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence Send to blast
XREKDAEKKA QHKRCQSFDS GYGISERENY VSKRAKHASL NETTGVAKKK AEQEEDGKKA 60 YEKKAQEKEE KEDRTKAAEK KVQEKEDGKK DVEKKAQHKR RQSFEPGYGL SERENYASKR 120 AKDASLNETT RVAGGIDNSK ASPYNIDGVQ NKLIMMYGHD HHTSAFSAAN TGLDASLNET 180 TRVAGGIDNS KASPYNIDGV QNKLIMMYGH DHHTSAFSAA NTGLAAGAFA SAPSIAAXIN 240 NERRRHEGYP LAFGTSKSNP YWIIIXIALV SPAGAFAFPL PNVAEVNYEG RGQQSYTMNF 300 GEVNKNHVRT SVYGTGDLAN SFATQSNYNF EGRGEKSYQL NFGEIRNNPV RQSAYVTGVS 360 SATQCHYERR VPELYTSTFG GGNTAGIVSS LYGSNPRTIP SVVNQGTHER SLGQSSGFAG 420 RNMVPAESSG YESGVSTVRP SSVSQDHFER KGSVIDGIDS TVVNFSIPDP LSFLTLMMKT 480 QQDRVICIKG CPLYCNRIKF VFWLNKNFLL GIPNDLIFLQ FHLLYWNTNS ASVGVLPYNN 540 AISFXYFEML KTIFYNXIAW IIMLFKKKNQ MREVEQAQDF KTHSLPLARI KKIMKADEDV 600 KMISAEAPVV FAKACEMFIL ELTLRSWIYT EENKRRTLQK NDIAAAIGRT DIFDFLVDIV 660 PRDEFKDEGL VIPRAAGAVP FMGPGDNVPS YYYVAQQAPN MAAYAPPTQQ MRSKAPX

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence Send to blast

XREKDAEKKA QHKRCQSFDS GYGISERENY VSKRAKHASL NETTGVAKKK AEQEEDGKKA  60
YEKKAQEKEE KEDRTKAAEK KVQEKEDGKK DVEKKAQHKR RQSFEPGYGL SERENYASKR  120
AKDASLNETT RVAGGIDNSK ASPYNIDGVQ NKLIMMYGHD HHTSAFSAAN TGLDASLNET  180
TRVAGGIDNS KASPYNIDGV QNKLIMMYGH DHHTSAFSAA NTGLAAGAFA SAPSIAAXIN  240
NERRRHEGYP LAFGTSKSNP YWIIIXIALV SPAGAFAFPL PNVAEVNYEG RGQQSYTMNF  300
GEVNKNHVRT SVYGTGDLAN SFATQSNYNF EGRGEKSYQL NFGEIRNNPV RQSAYVTGVS  360
SATQCHYERR VPELYTSTFG GGNTAGIVSS LYGSNPRTIP SVVNQGTHER SLGQSSGFAG  420
RNMVPAESSG YESGVSTVRP SSVSQDHFER KGSVIDGIDS TVVNFSIPDP LSFLTLMMKT  480
QQDRVICIKG CPLYCNRIKF VFWLNKNFLL GIPNDLIFLQ FHLLYWNTNS ASVGVLPYNN  540
AISFXYFEML KTIFYNXIAW IIMLFKKKNQ MREVEQAQDF KTHSLPLARI KKIMKADEDV  600
KMISAEAPVV FAKACEMFIL ELTLRSWIYT EENKRRTLQK NDIAAAIGRT DIFDFLVDIV  660
PRDEFKDEGL VIPRAAGAVP FMGPGDNVPS YYYVAQQAPN MAAYAPPTQQ MRSKAPX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	8e-50	570	662	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	634	640	RRTLQKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.1341	0.0	needle\| root\| stem\| vegetative bud