PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl008855

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

BES1

Protein Properties

Length: 663aa MW: 75260.8 Da PI: 6.5188

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55335452	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-4491	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	134.1	1.5e-41	56	160	6	109
DUF822 6 kptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.sslkssala 104 ++++kE+E++k+RER+RRai+++i++GLR++Gny lp+raD+n+V++AL+reAGw+v++DGttyr + + + ++a s++ s+ + sl+s+ ++ Pgl008855 56 REREKEKERTKLRERQRRAITSRILSGLRQYGNYTLPVRADINDVIAALAREAGWTVDPDGTTYRSQAHTPYPVKVAALSSTSLAGSPGSsASLRSTLVK 155 6899*************************************************************66655545555555555555554444668888888 PP DUF822 105 spves 109 p+++ Pgl008855 156 NPIDH 160 88776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.9E-40	56	160	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.39E-182	220	659	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	2.1E-199	223	657	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	3.2E-104	229	647	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-69	260	274	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-69	281	299	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-69	303	324	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	7.4E-8	386	395	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.1E-69	396	418	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-69	469	488	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-69	503	519	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-69	520	531	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-69	538	561	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	7.4E-8	541	551	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.1E-69	578	600	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	7.4E-8	629	643	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	7.4E-8	644	658	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence Send to blast
MADQAHTVMS ASAIKQDEDD QELQNQQREQ EQEQGQGNAQ QVLLPAGNAT VKRRIREREK 60 EKERTKLRER QRRAITSRIL SGLRQYGNYT LPVRADINDV IAALAREAGW TVDPDGTTYR 120 SQAHTPYPVK VAALSSTSLA GSPGSSASLR STLVKNPIDH RPSGVRLRDG FTLKSPGSTM 180 LGEKGPKKEK IYNVAIDNSL ELMEEEQVQE FLPKEPERDF SGTPDVPVYV MLPIGIINDR 240 CQLVDPESLR KDLRALKSIN VDGIMVDCWW GVVEGRTPQK YVWSGYRELF NIVREAKLKL 300 QVVMSFHECG GTAGDDVNIP LPKWILEIGK DNPDIFFTDR EGRRNTECLT WGIDKERVLK 360 GRTAVEVYFD YMRSFRMEFD DLFMDGAISG IEIGLGASGE LKYPSYPERH GWRYPGIGEF 420 QCYDKYMQKS LRKAAEARGH SFWARGPDNA GYYNSQPHDT GFFRDGGDYN SYYGRFFLRW 480 YSQGLIEHGD RVLDLANLAF EGTRIAVKVS GIHWWYKTAS HAAELTAGFY NSSNLDGYGP 540 VCQIMKKHNA TFNFSCVDLN SLDHEQGFLE AMEDPHGLVW QVMNAAWDAG IPVASVNPVP 600 CYDRDGYNRI LENAKPRNDP DGRHLIAFTY LRLSPTLMER ANFCEFDRFV KRMHGEAVLN 660 FHV

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence Send to blast

MADQAHTVMS ASAIKQDEDD QELQNQQREQ EQEQGQGNAQ QVLLPAGNAT VKRRIREREK  60
EKERTKLRER QRRAITSRIL SGLRQYGNYT LPVRADINDV IAALAREAGW TVDPDGTTYR  120
SQAHTPYPVK VAALSSTSLA GSPGSSASLR STLVKNPIDH RPSGVRLRDG FTLKSPGSTM  180
LGEKGPKKEK IYNVAIDNSL ELMEEEQVQE FLPKEPERDF SGTPDVPVYV MLPIGIINDR  240
CQLVDPESLR KDLRALKSIN VDGIMVDCWW GVVEGRTPQK YVWSGYRELF NIVREAKLKL  300
QVVMSFHECG GTAGDDVNIP LPKWILEIGK DNPDIFFTDR EGRRNTECLT WGIDKERVLK  360
GRTAVEVYFD YMRSFRMEFD DLFMDGAISG IEIGLGASGE LKYPSYPERH GWRYPGIGEF  420
QCYDKYMQKS LRKAAEARGH SFWARGPDNA GYYNSQPHDT GFFRDGGDYN SYYGRFFLRW  480
YSQGLIEHGD RVLDLANLAF EGTRIAVKVS GIHWWYKTAS HAAELTAGFY NSSNLDGYGP  540
VCQIMKKHNA TFNFSCVDLN SLDHEQGFLE AMEDPHGLVW QVMNAAWDAG IPVASVNPVP  600
CYDRDGYNRI LENAKPRNDP DGRHLIAFTY LRLSPTLMER ANFCEFDRFV KRMHGEAVLN  660
FHV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdr_A	1e-156	226	656	12	444	Beta-amylase
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.15358	0.0	stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010255371.1	0.0	PREDICTED: beta-amylase 2, chloroplastic-like isoform X1
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A1U7ZPR4	0.0	A0A1U7ZPR4_NELNU; Beta-amylase
TrEMBL	A0A2G5E0V5	0.0	A0A2G5E0V5_AQUCA; Beta-amylase
STRING	Aquca_013_00313.1	0.0	(Aquilegia coerulea)
STRING	XP_010255371.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]