PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl008912

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

TCP

Protein Properties

Length: 613aa MW: 67510.8 Da PI: 9.6511

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-175a-Picea_glauca-47158	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.6	5.3e-39	201	328	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.kskk 99 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak++i+elt+++ sa ++ ++ +a+ ++++++a+++ +++ Pgl008912 201 TGRKDRHSKVYTAKGPRDRRVRLSALTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELTQLPPLSA--LnIPN-QEPKAEDEGIKEQAEQEIaLENE 297 79**************************************************************44444..32111.22222222333333333312222 PP TCP 100 sqksaasalnlakesrakarararertrekmrik 133 + +++ + a +sra ar+rarer +e+ + + Pgl008912 298 AAAKP---GARATDSRAIARERARERAKERTQER 328 22222...23344677666666666666665544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-31	201	328	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.467	203	261	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.447	307	324	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MAKSLGRTKF KLGYIKFRPI QNIPKLQGNE ILNGVSKEAR LAPNLERKLQ ALDPGRYLNP 60 RKRAVEEARQ ILNIDSSSSS SDQNGDEKSL RRSPEEEEEE EEKHYGSTQD RIHSMSFDDL 120 RSLLVHNTTT TTNPVDSVNI TRSRENASTD VDLARRMCDN KRDSSDQRPP RGRPPGTSIP 180 RQQLPMGEIV EVEGGHIVRS TGRKDRHSKV YTAKGPRDRR VRLSALTAIQ FYDVQDRLGF 240 DRPSKAVDWL IKKAKTSIDE LTQLPPLSAL NIPNQEPKAE DEGIKEQAEQ EIALENEAAA 300 KPGARATDSR AIARERARER AKERTQERSD VVAKAQTYLR PRSHLFSLNP ASTSPTVPTF 360 QLKNAADSEN LATGSNAANL QMGMRSINNI SSTPSDSISR TLNLEALQRQ SFYQYLFSHT 420 NNQALQNFST VSQFDGAAAA AALYAAAPAN SDAAQNSNQQ TNQSLFSSST ASAFQIPSGF 480 SREIVMQEQL HHEFLSSQPQ PHRISSAPPV WNCNSIYTDF GNNNTNNIAV SAPNMMRGGG 540 GHCNSLTLRG TLQSSSSPVR VRSNPPLLHD NAAAGQCPQT GNGFSGFRIP ARIQGIDENA 600 DVKPSPASSN SRF

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MAKSLGRTKF KLGYIKFRPI QNIPKLQGNE ILNGVSKEAR LAPNLERKLQ ALDPGRYLNP  60
RKRAVEEARQ ILNIDSSSSS SDQNGDEKSL RRSPEEEEEE EEKHYGSTQD RIHSMSFDDL  120
RSLLVHNTTT TTNPVDSVNI TRSRENASTD VDLARRMCDN KRDSSDQRPP RGRPPGTSIP  180
RQQLPMGEIV EVEGGHIVRS TGRKDRHSKV YTAKGPRDRR VRLSALTAIQ FYDVQDRLGF  240
DRPSKAVDWL IKKAKTSIDE LTQLPPLSAL NIPNQEPKAE DEGIKEQAEQ EIALENEAAA  300
KPGARATDSR AIARERARER AKERTQERSD VVAKAQTYLR PRSHLFSLNP ASTSPTVPTF  360
QLKNAADSEN LATGSNAANL QMGMRSINNI SSTPSDSISR TLNLEALQRQ SFYQYLFSHT  420
NNQALQNFST VSQFDGAAAA AALYAAAPAN SDAAQNSNQQ TNQSLFSSST ASAFQIPSGF  480
SREIVMQEQL HHEFLSSQPQ PHRISSAPPV WNCNSIYTDF GNNNTNNIAV SAPNMMRGGG  540
GHCNSLTLRG TLQSSSSPVR VRSNPPLLHD NAAAGQCPQT GNGFSGFRIP ARIQGIDENA  600
DVKPSPASSN SRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-19	208	261	1	54	Putative transcription factor PCF6
5zkt_B	1e-19	208	261	1	54	Putative transcription factor PCF6

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.14893	0.0	needle\| root

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	2e-44	TCP family protein