PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl009019

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 552aa MW: 61660.5 Da PI: 7.9201

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55334973	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-4602	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.5e-05	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s++k H++t+ Pgl009019 35 WKCEKCSKGYAVQSDYKAHLKTC 57 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	9.7E-5	26	56	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Gene3D	G3DSA:1.20.1600.10	5.1E-4	375	498	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence Send to blast
XPDPTCLHND PCHALGDLVG IKKHFRRKHS IEKQWKCEKC SKGYAVQSDY KAHLKTCGTR 60 GHSCDCGRVF SRVESFIEHQ DNCIKAKERA AFGYSDQPSL PSLTARTSSS NDTLSATRSE 120 LSSAGKQFDS AKFHDQAAWP NMEQRELQFL PANHQYNTSE TAITSTNNAA DVTRDHFISS 180 ATDQRSNPAT SHAKEHRFLD DSALRLQLSL GFCTDPPENH EKKPHVKPDH FAAANQRQPS 240 NRAGSQRALG LALNSNDSMP GTKNVEAEAA MTDVFSTSSR PLDHYEASLI NDTGSSGAVV 300 ENGFRDSPYK KRKELSLFEA LWPGHMVRRD SEEVQAPVNL TWKSSTAQIP APPLPETRQG 360 EKQSRYLGRM AEAIVNVESI SSQSEAVERT QLVNPWSDIA AAARLAKEQA QQERDEAKSH 420 MAGVELLKHQ AREQLRQATA EKAYAEHARD LAKKQIELAE AEFAAARRIR EQAQAQLAKA 480 QLLKEQATRR IDETRLEITC QACRQQFLCH IPPSWQPDQN SNKIPMMLPV EYPSASNFSR 540 PVLFQNGLKK EP

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence Send to blast

XPDPTCLHND PCHALGDLVG IKKHFRRKHS IEKQWKCEKC SKGYAVQSDY KAHLKTCGTR  60
GHSCDCGRVF SRVESFIEHQ DNCIKAKERA AFGYSDQPSL PSLTARTSSS NDTLSATRSE  120
LSSAGKQFDS AKFHDQAAWP NMEQRELQFL PANHQYNTSE TAITSTNNAA DVTRDHFISS  180
ATDQRSNPAT SHAKEHRFLD DSALRLQLSL GFCTDPPENH EKKPHVKPDH FAAANQRQPS  240
NRAGSQRALG LALNSNDSMP GTKNVEAEAA MTDVFSTSSR PLDHYEASLI NDTGSSGAVV  300
ENGFRDSPYK KRKELSLFEA LWPGHMVRRD SEEVQAPVNL TWKSSTAQIP APPLPETRQG  360
EKQSRYLGRM AEAIVNVESI SSQSEAVERT QLVNPWSDIA AAARLAKEQA QQERDEAKSH  420
MAGVELLKHQ AREQLRQATA EKAYAEHARD LAKKQIELAE AEFAAARRIR EQAQAQLAKA  480
QLLKEQATRR IDETRLEITC QACRQQFLCH IPPSWQPDQN SNKIPMMLPV EYPSASNFSR  540
PVLFQNGLKK EP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-19	32	91	4	63	Zinc finger protein JACKDAW
5b3h_F	3e-19	32	91	4	63	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.3393	0.0	stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006849469.1	3e-53	protein indeterminate-domain 16
TrEMBL	W1PUR9	7e-52	W1PUR9_AMBTC; Uncharacterized protein
STRING	ERN11050	1e-52	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.2	2e-52	C2H2-like zinc finger protein