PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009105
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 525aa    MW: 58550.9 Da    PI: 6.8654
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55347480PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-47700PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00111537123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y C++C+k+F +   L  H+r H
  Pgl009105 15 YLCKICSKRFVSGRALGGHMRAH 37
               56*******************98 PP
2zf-C2H212.40.0005120138321
                ETTTTEEESSHHHHHHHHH CS
    zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                C  Cgk F+++  L  H++
  Pgl009105 120 CDLCGKEFRSWKGLFGHMK 138
                ******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-71537No hitNo description
SMARTSM003550.0741537IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-81537IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1181542IPR007087Zinc finger, C2H2
PROSITE patternPS0002801737IPR007087Zinc finger, C2H2
SuperFamilySSF576672.05E-7113140No hitNo description
PROSITE profilePS5015710.055118145IPR007087Zinc finger, C2H2
SMARTSM003550.0063118140IPR015880Zinc finger, C2H2-like
PfamPF139127.3E-7119142IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
PfamPF139121.8E-8290315IPR007087Zinc finger, C2H2
SuperFamilySSF576672.49E-5290313No hitNo description
PROSITE profilePS501579.91291318IPR007087Zinc finger, C2H2
SMARTSM003550.34291313IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280293313IPR007087Zinc finger, C2H2
SuperFamilySSF576672.49E-5383410No hitNo description
PROSITE profilePS501578.642388415IPR007087Zinc finger, C2H2
SMARTSM003557.2388410IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-10389412IPR007087Zinc finger, C2H2
PROSITE patternPS000280390410IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MEVFRKQEGE HPSSYLCKIC SKRFVSGRAL GGHMRAHAPA SIAADTLTEA EFQKSKRPRA  60
SDHKSMEKEK NEEGLDSNGS NLIYALRRNP KRSGRFPDRD YSFLVGHGFD FKPIDSSINC  120
DLCGKEFRSW KGLFGHMKCH SETHQDSGDA HLEESQKHET QDDEEERTES EVEIEIDQSS  180
GNSSRFDKWM KGKRSKRPRY AIQLNPHHHF DSEIDNEEQE MAMSLVMLAS GVNTGQNPQF  240
QAGPGEAGSG DIKLPNTGSQ LLKCMRKKPK SKKIDGNVGL SVDDEVKRAR YKCTTCNRLF  300
HSHQALGGHR ASHNKVQASF SQIGEESESL EEEITDEELI PGIDSHLPGN FHKPRPKERT  360
QNSSVKARDE TMITEPAVSS EKRTPRGPKC SICHRLFASG QALGGHKRCH WGTAGASDSI  420
STTSRKKETP MEQQMPARVE LFDLNLPAPV DDDCDAVNLN NLGSNAVDFH RAXRCPNPQP  480
SLLAVLVDGL FLSNAQSHIS KNDEADVKVG CDSDFQVRAE SWLQL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RQJ11e-147A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-18C2H2-like zinc finger protein