PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009133
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family SBP
Protein Properties Length: 518aa    MW: 57013.6 Da    PI: 7.5783
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55332994PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-7282PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.36.1e-40243319177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +CqvegC++ l++ake+h+rhkvCe+hskap+v+v g+eqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk++
  Pgl009133 243 RCQVEGCNVVLANAKEHHKRHKVCEMHSKAPKVIVLGIEQRFCQQCSRFHAISEFDDAKRSCRRRLAGHNERRRKNS 319
                6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-33238305IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.898241318IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.5E-38242323IPR004333Transcription factor, SBP-box
PfamPF031101.1E-31244317IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDSNSHGGSS SSSHDHCWPS KMQDWHLRSP WDWEGCTGLY SGGDRYEKLP MAEWVCSEEG  60
YNIGEELFRG TSMVHESSSL SEPLMASGNF NEVITDRSFS GNHKAQFPLE VKIHPSSLAE  120
GSVKSEGNGL FKGWLVEGVT NAGNFLGGSE YSHSGQRNMV VVGLGGRNDN YHSGNEGPMR  180
ENINVIKDVQ GDSLTCLKLG KRQYFGDGAN PAKVIHPVSG NSTGDCVYKK PRALPASTAQ  240
PPRCQVEGCN VVLANAKEHH KRHKVCEMHS KAPKVIVLGI EQRFCQQCSR FHAISEFDDA  300
KRSCRRRLAG HNERRRKNSL DSLANAGSQE EKRLIGVLGE KFPMGRYALP YLPSPGRALS  360
LLSSQQSWMN SGVCSLPGDL SSRSSAALRE LIAENRAQSV SRYSDGQYDH REGRSVRMLQ  420
PPIQEQQTQS QEEMGNCRFM PGLRSLENNG KVEYVGDEVK KHGGVIGSHA VVVRPTLDLM  480
QHSNSLFALQ SGRNGSSSSS SSEEECEIWK TFEGTHIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-292443171184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.150700.0stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9QX430.0A0A0C9QX43_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_2011_1782 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.11e-36squamosa promoter binding protein-like 3