PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009190
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 503aa    MW: 53892.9 Da    PI: 7.0729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55348324PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-25886PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12433478655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk Lq
  Pgl009190 433 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDEAVDYIKFLQ 478
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.408427477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16430490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-12431482No hitNo description
Gene3DG3DSA:4.10.280.105.6E-16432488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9433478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-14433483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
XYCSSEKGEQ GLMQQVDESN RHSASTGHST TSIHMDINLS TQVSSGLMRY RSAPSSFLAS  60
LVDEAGDYLP RIAGSQEPDH AVIARYFSAD SSSLTSDSSS GVIQSHGLDR SAAHKEPKMF  120
SRMNAGANAG LKSAGAGNED VGKHRLASIL ENGPEPEPEP GEVLSQDSFC NSPMMYRAQD  180
SRSGVENSYR MNPLCCNPLV SSGGRINNLL LTAVKSNLVR HSSSPAGLLS RIAGVDGRGI  240
YENGYSIGAV KNMGNLSSEN GSSVAPNRLA SQMNFMRQGS STSGLSSQLS DMGLPQVVDK  300
LNMPVGSSAD SLGGSSSDDG SLSNGNGVQR YMSSFPVGSW DDAVIVSEGF AGMQNGAAFS  360
ARKRVRDLNG KMMPALNLAE SQKGEPISHL PAGLNHQFSL TKSPSEIAME KLLQDSVPCK  420
IRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTADMLDEA VDYIKFLQTQ  480
VRELSENQPK CDCSCKMNAS ETT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ9SQ791e-113Q9SQ79_PINTA; Helix-loop-helix protein 1A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-46bHLH family protein