PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009193
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TCP
Protein Properties Length: 502aa    MW: 54491.2 Da    PI: 7.6103
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55333595PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-15447PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1035e-32582382124
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssg........ 88 
                +g+kdrhsk+ T++g+RdRRvRls+++a++++dLq++LG+d++sk++ WL+++a+ ai+el+ +     s     ++ ++  + ++sn s++        
  Pgl009193  58 TGGKDRHSKVITAKGLRDRRVRLSVPTAIQLYDLQERLGYDQPSKAVGWLIKAAESAIDELPVLnpemdS-----ASADNVAQLNSSNCSNAdhcvgspr 152
                689*************************************************************554431.....2222222222222222223333444 PP

        TCP  89 ..................................................kaaksaakskksqksaasalnlakesrakararare 124
                                                                  +++ s+ + k s +++++ +     sr +ar +a e
  Pgl009193 153 esatavtgsaftafrvglgcakaqgrnshkaingepmsiatlrgsdlgrsSSSISDGSIKGSAEHTSNCSVSEPTSRIEARLKASE 238
                44445555555566666666666666666666666667777777777654222222222222222222333333666666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3159190IPR005333Transcription factor, TCP
PROSITE profilePS5136931.44660118IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MEIQNKDLAA YSESMNKGRL QEDSDKTQGN GKGSKRKAWK MEGKVEQEWK IVSVSRLTGG  60
KDRHSKVITA KGLRDRRVRL SVPTAIQLYD LQERLGYDQP SKAVGWLIKA AESAIDELPV  120
LNPEMDSASA DNVAQLNSSN CSNADHCVGS PRESATAVTG SAFTAFRVGL GCAKAQGRNS  180
HKAINGEPMS IATLRGSDLG RSSSSISDGS IKGSAEHTSN CSVSEPTSRI EARLKASELA  240
TEEIGLGQNS GGGSPPAIDQ LNSMQPFLTS YMLKSIFPDX SLLFESKSSK DNNPCGIHTQ  300
ILSGTDNVQQ LWDYNNRPSY TDMLCTRDSH QLQDLASSST APLQKSFPRV PSTPGSHIGN  360
SCLQSYEMAD SAISFFDPKQ SRPFGGNAEQ GQANLSYSNF PNMIMKRVEQ QRQQQAQMHI  420
KHYASTIVPT FSNDINFLTS SLSSGEPHQS ISSSITNMPS LSHTHKNAYG EASANAAHDF  480
VPSQDYEARV FPGFQYAGQR KA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2165119155Putative transcription factor PCF6
5zkt_B2e-2165119155Putative transcription factor PCF6
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-32TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2