PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009196
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family AP2
Protein Properties Length: 502aa    MW: 55313.4 Da    PI: 9.1738
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55340674PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-43965PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-174897155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Pgl009196 48 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 97
               78*******************......55************************998 PP
2AP241.82.6e-13140190155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  Pgl009196 140 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEIEAARAYDQAAIKCNG 190
                89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-94897IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-1648106IPR016177DNA-binding domain
PROSITE profilePS5103217.87349105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1749106IPR001471AP2/ERF domain
CDDcd000182.05E-1149107No hitNo description
SMARTSM003807.2E-3349111IPR001471AP2/ERF domain
PfamPF008478.7E-9140190IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-16140200IPR016177DNA-binding domain
CDDcd000181.66E-24140200No hitNo description
PROSITE profilePS5103215.079141198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-15141198IPR001471AP2/ERF domain
SMARTSM003801.0E-30141204IPR001471AP2/ERF domain
PRINTSPR003676.5E-6142153IPR001471AP2/ERF domain
PRINTSPR003676.5E-6180200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
XSCDQFSRSL WGDHLASSQT DSSGTPNPPT VPIQAVKKSR RGPRSRSSQY RGVTFYRRTG  60
RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGQDA DINFNLSDYE EDLKQLNNLT  120
KEEFVHILRR QSNGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDNEIEAARA  180
YDQAAIKCNG REAVTNFDPS VYQNELLTEA NSSSFDQNLD LSLGISAPTV LDTSVSGDNK  240
IGGLKVKTST DIVVEPDWKK ARCAISTPED GSQQTQLEAP FPYGQLGQYV GLQNRETFFS  300
QGKQTPFTFL PQYQIHQPNS EKIQVKGNLT YNPLRLLPNP KDGSIHLALE QQGLWSRVCP  360
LSFPNYKLYS PTGGLQGQGG SGLSPLLSSS IEHQPGWPWK FHTNGSSASM LAAASSGFSP  420
QAQTTLAHPS DWMHKLQGFQ YPSGQSMGTQ LSAPKPSSQR QNLHSTDPSS GGQVLGLSLS  480
ISTKSIAEPC SSKDNDGSKF LK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.11030.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LLT50.0B8LLT5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-97AP2 family protein