PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009212
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 499aa    MW: 56771.7 Da    PI: 8.0687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55342389PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-45070PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.82.5e-15285327855
                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +ErrRR++iN +f  Lr+++P       +K +K +iL +A+eY+k+Lq
  Pgl009212 285 AERRRRNKINRKFKILRSIIPFF-----TKTNKESILGEAIEYLKHLQ 327
                7*********************8.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.4E-3619172IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088814.97277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-15283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-16284344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16284341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12285327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MASNRSDLTT IHGRNIRLLL QAVVRSTQWT YSTFWRFSPS KGLLVWREGF YNGDVERSLQ  60
LRELFHSLKS EEEINQPSSK QCVALSPEDL KDTDWFYLVS MSFEKCLPGL ALANRCPVWL  120
SRANEVEARV FSRALLAKTV ACIPLMDGVL ELGVTKLVPE DPGLIEHVKS FFLDDAQQVI  180
TSEASSSQIS SDFTAAEDFI QTNGSIESNM SEDITTGIAS WSEKEKLRVV RILQGRCLLK  240
VDRKGNPVMR KEPALASSQS RLKNKFTEGE EDSDLTDVNG DSVLAERRRR NKINRKFKIL  300
RSIIPFFTKT NKESILGEAI EYLKHLQRRV LELESHKKQT EVDHNGFQEQ NPIDGAIIDK  360
QDEELSDEKH FSRVKKLRDA NDQLKSPRMD KRKVRVVEGS ATSPMETGEG SMAEIEVSLN  420
DEKALLQLKC CWKKGLLLQI LQTLSSFHLE IYESQSSRVQ HNYFVATIKA IVIQQVGQTR  480
NGQRETIARV KEAIQRVVL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9751e-125A0A167V975_PICAB; Transcription factor bHLH-3
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-46bHLH family protein