PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009213
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 499aa    MW: 55511.6 Da    PI: 6.5036
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55348700PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-7746PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l d+++++G g+W+t +++ g+ R++k+c++rw +yl
        Pgl009213 14 KGPWTPEEDQKLTDYIQRHGHGSWRTLPKHAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding521.6e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++ +v+++  lG++ W++Ia++++ gRt++++k++w+++l
        Pgl009213  67 RGKFSFEEEQTIVQLHGVLGNK-WSAIASHLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129416.962961IPR017930Myb domain
SuperFamilySSF466897.11E-3111108IPR009057Homeodomain-like
SMARTSM007171.3E-141363IPR001005SANT/Myb domain
PfamPF002499.9E-171461IPR001005SANT/Myb domain
CDDcd001671.02E-111661No hitNo description
PROSITE profilePS5129425.42862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2665116IPR009057Homeodomain-like
SMARTSM007172.8E-1666114IPR001005SANT/Myb domain
PfamPF002493.3E-1567112IPR001005SANT/Myb domain
CDDcd001671.10E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MGRAPCCDKD GLKKGPWTPE EDQKLTDYIQ RHGHGSWRTL PKHAGLLRCG KSCRLRWTNY  60
LRPDIKRGKF SFEEEQTIVQ LHGVLGNKWS AIASHLPGRT DNEIKNYWNT HLKKRLLQMG  120
IDPVTHRPRI DLFNFSNMTQ LLAPASLSHM AAQWERARLE AVTTDYLRVL AAYRSAAMMQ  180
QASHSQSSTM DADHLMSYLR NQLGDAAFCN MPDNMNSAMA QANWALNSEN LGSSDSNALA  240
DPDYYGTAAS SGCSDYAKFA NPNAKYCRTV CMLLASQWHF DDAAFIAHFY SLSLDGFHTL  300
KAEQRNNNSN KNNVPNSHDS TKINNQALLQ DQGYDNLMNA SASLVQQHSR SQDNNSLSTD  360
QLVTSPILWP EGQFLGISKN NNSESVPALV STTSSPNIFN DTSDMFHDAS PVQNSQNCMR  420
SDCISTNGYG LPADLFLDFG LETTKQQNVE TMAPATSTTH VISGSSSWSE MQNSHEDGGD  480
YWSNMLKYVG ESSISNSTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.77980.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYF50.0A5JYF5_PICGL; R2R3-MYB transcription factor MYB11
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.18e-85myb domain protein 93