 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pgl009273 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
| Family | SBP | ||||||||
| Protein Properties | Length: 486aa MW: 54554.9 Da PI: 5.9785 | ||||||||
| Description | SBP family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SBP | 115.2 | 3.6e-36 | 130 | 206 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
+Cqv++Cead+s++k yhrrh+vC +++a++v+++++ qr+CqqC++fh l++fDe+krsCrr+L++hn+rrr+k
Pgl009273 130 RCQVPSCEADISHLKGYHRRHRVCLCCANAATVVLDDVPQRYCQQCGKFHLLTDFDEGKRSCRRKLERHNNRRRRKP 206
6************************************************************************9975 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:4.10.1100.10 | 1.3E-26 | 128 | 192 | IPR004333 | Transcription factor, SBP-box |
| PROSITE profile | PS51141 | 28.872 | 128 | 205 | IPR004333 | Transcription factor, SBP-box |
| SuperFamily | SSF103612 | 1.06E-32 | 129 | 210 | IPR004333 | Transcription factor, SBP-box |
| Pfam | PF03110 | 5.8E-26 | 131 | 205 | IPR004333 | Transcription factor, SBP-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 486 aa Download sequence Send to blast |
MADLLDDSVA SVLDAGDWEW DSVLDFSIGS LPHILPWQSE ELSDDLSERL LPSQVLEVNQ 60 AREVQNASPR NRSQDAEEEE KAAASSRIRK RDPRLICSNF LAGRVPCACP EMDNMEEELS 120 RKRAKVVVLR CQVPSCEADI SHLKGYHRRH RVCLCCANAA TVVLDDVPQR YCQQCGKFHL 180 LTDFDEGKRS CRRKLERHNN RRRRKPVNVV EASVQEQTLR AESALQSADT EPHNNGKSGQ 240 ASKSFSYPGC GEKQSSSGSE ERNISEVEQP YKGDSSLKNV GSRSDDVSKI SSSSMPVKVS 300 TELEGKRFPE RDIGSGEKFD DEDVRVVENS RAIMLVGPRS GDNGSTYAEL NEQSYTGMPI 360 EENSHKDRFP HNISGRSEKD EGAGPLKSSL SSNRHDKHFS YTSVCPTGRI SFKLYDWNPA 420 EFPRRLRQQI LQWLADMPIE LEGYIRPGCT ILTAFIALPQ FMWEKLFANS PGYIHSLLNG 480 SESILS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ul5_A | 1e-39 | 128 | 208 | 3 | 83 | squamosa promoter binding protein-like 7 |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 191 | 203 | RRKLERHNNRRRR |
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}. | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed in roots rosette leaves, cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:24335506}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269|PubMed:19122104, ECO:0000269|PubMed:22374396, ECO:0000269|PubMed:25516599, ECO:0000269|PubMed:26511915, ECO:0000269|PubMed:27352843}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Swissprot | Q8S9G8 | 3e-56 | SPL7_ARATH; Squamosa promoter-binding-like protein 7 | ||||
| TrEMBL | B8LQP1 | 0.0 | B8LQP1_PICSI; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G18830.2 | 2e-43 | squamosa promoter binding protein-like 7 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|