PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009305
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 479aa    MW: 52846.5 Da    PI: 6.8271
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-4241PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.1e-13952548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     T+eEd++lv +++ lG g+W++ +++ g+ R++k+c++rw +yl
        Pgl009305  9 TPEEDQKLVTYIQDLGHGSWRALPQKAGLLRCGKSCRLRWANYL 52
                     9***************************99************97 PP
2Myb_DNA-binding52.51.1e-1658103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
        Pgl009305  58 RGKFSVQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 103
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.9E-6454IPR001005SANT/Myb domain
PROSITE profilePS500908.943952IPR017877Myb-like domain
PfamPF002499.5E-12952IPR001005SANT/Myb domain
CDDcd001676.24E-8952No hitNo description
Gene3DG3DSA:1.10.10.601.5E-19959IPR009057Homeodomain-like
SuperFamilySSF466891.05E-24999IPR009057Homeodomain-like
PROSITE profilePS5129426.31153107IPR017930Myb domain
SMARTSM007175.3E-1757105IPR001005SANT/Myb domain
PfamPF002495.1E-1658103IPR001005SANT/Myb domain
CDDcd001675.08E-1260103No hitNo description
Gene3DG3DSA:1.10.10.608.0E-2660107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
XAPPSAEGTP EEDQKLVTYI QDLGHGSWRA LPQKAGLLRC GKSCRLRWAN YLRPDIKRGK  60
FSVQEEQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLLQM GIDPVTHKPK  120
SESIIAAGVH SSNGSSNLSH MAQWESARLE AESRLARESK LRARGLWSSP SRNVNVSSDI  180
FSRLRRASQG FDFDKEESKI LGLNSVGGFD GMKITQKWDK FQDLRSGTKL EQCNLSALGG  240
SLGCYNPVEN GQIEDRASKT SYLSLLQQAM CPSAQGSKIL YNEARKLVES QKNRQANAAV  300
TPHFNAFHLD QSENCDEKKP TIVSEKAHSD VQSSSHEENV ELPDSHHELL LPSVMLNDGN  360
CSSARSDVSE LTKTEQGADT SYDKVGNSDN ILSEFQHIHS DEISSSGGFK SGSSYDGFNA  420
DMLLDLVVTP PNGFATAGCG ENRSLSGLSV DDNKEYWSNM FSVCNSLPNG NHSGVQSIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21910711108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.207370.0somatic embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217733.14e-89myb-related protein Zm38
TrEMBLA9P0V40.0A9P0V4_PICSI; Uncharacterized protein
STRINGEMJ189321e-88(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.12e-86myb domain protein 106