PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009490
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 448aa    MW: 49134.9 Da    PI: 6.0505
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55335062PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-28462PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd+ l+ +++ +G g W+t +++ g+ R++k+c++rw +yl
        Pgl009490 14 RGPWTPEEDLCLASYIEAHGEGGWRTLPKKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding49.97.6e-1672112648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +eE++l+++++++lG++ W++Ia +m+ gRt++++k++w+++l
        Pgl009490  72 PEEEDLILRLHRLLGNR-WSLIAGRMP-GRTDNEVKNYWNTHL 112
                      7****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-21563IPR009057Homeodomain-like
PROSITE profilePS5129414.435961IPR017930Myb domain
SuperFamilySSF466891.36E-2811108IPR009057Homeodomain-like
SMARTSM007171.2E-111363IPR001005SANT/Myb domain
PfamPF002496.7E-151461IPR001005SANT/Myb domain
CDDcd001674.55E-91661No hitNo description
PROSITE profilePS5129425.17862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2464117IPR009057Homeodomain-like
SMARTSM007171.8E-1466114IPR001005SANT/Myb domain
PfamPF002492.8E-1472112IPR001005SANT/Myb domain
CDDcd001672.49E-1272112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGRTPCCLKV GLNRGPWTPE EDLCLASYIE AHGEGGWRTL PKKAGLLRCG KSCRLRWMNY  60
LRPDVKHGHI LPEEEDLILR LHRLLGNRWS LIAGRMPGRT DNEVKNYWNT HLSKKLISQG  120
IDPRTHKPLS ESEDICSSPG NSELSHKSQK ENNAEIPRNV ADGTADFQDA VASKGGAIAE  180
DQTSGKSPAN QLLESSPSQP ASVAVDFVSR PPSISSSPHS FQQSITSTCV PGGVSDSVDI  240
NHNKGCKQIS FPLLNTACFN SSAQEEVAGD YLDQYLMKNP VTNSNDMTTS TVRLSSALQN  300
APFVGQIDSN HAFMSGNALL NEKRQMSQSA QALEMEPHPS FVVHPSEEGT YNKLSHTTCA  360
VSDQITAFNY QYLISPTATG AALVDFNSDI FPSFVEPFIN EELQLQEPSV QTSIARNIEL  420
CPSSQPKAVN LSNYDLWSML SPSSQYRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25121165108B-MYB
1h8a_C8e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.234540.0needle| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNN40.0B8LNN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-72myb domain protein 5