PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009503
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family AP2
Protein Properties Length: 446aa    MW: 49562.8 Da    PI: 8.0347
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55333321PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-47882PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-162674255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               +y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Pgl009503 26 QYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 74
               69******************......55************************997 PP
2AP223.21.8e-07118167255
        AP2   2 gykGV.rwdkkrgr..WvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GV +    +g+  W+        n   +k+++lg f+++e+Aa+a+++a+ + +g
  Pgl009503 118 KYRGVlCISVGDGKpeWA--------NSsGKKYIYLGLFDSEEDAARAHDKAAIRCNG 167
                566665444445554455........23346**********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.5E-172682IPR001471AP2/ERF domain
CDDcd000181.96E-112681No hitNo description
PfamPF008471.0E-82674IPR001471AP2/ERF domain
PROSITE profilePS5103217.822682IPR001471AP2/ERF domain
SMARTSM003808.5E-332688IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-152682IPR016177DNA-binding domain
SuperFamilySSF541716.21E-11117176IPR016177DNA-binding domain
CDDcd000181.26E-15117177No hitNo description
Gene3DG3DSA:3.30.730.102.9E-11118175IPR001471AP2/ERF domain
SMARTSM003802.3E-15118181IPR001471AP2/ERF domain
PROSITE profilePS5103212.668118175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
NLGKSRRKIT SLSRKVDEDR DPEAXQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA  60
AARAYDRAAI KFRGVDADIN FTLTDYQEDL DQTSKLSKEE FVHILRRQST GFSRGSSKYR  120
GVLCISVGDG KPEWANSSGK KYIYLGLFDS EEDAARAHDK AAIRCNGKDA VTNFDPSSYE  180
NEILEEGRES QTSTGFDQNL DLSLGMGHVT TQLKKSPSYK SRVEEDSQLN RIEAVTYSNL  240
SQDSKILSCL TSKGVENAVP EFQSLARGHA VYWNSQTLQV PDAMKYNQSH TREDNAYVQT  300
AISGSQLYPD HLSNCKRLNM EGLKEQSLGV PASTVSFCPM KQQSGWTWQL HASGPTTPVF  360
TTNRSPASGF SPQIHTAFVP STHGCHKMGV HWAAQSTDPC MVQTPSPHLA TRLTNGPDSG  420
DHTVGLTLDL PGKKIKRSSV QRDKVD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.251210.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251394.15e-88PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
TrEMBLQ9FV330.0Q9FV33_PICAB; APETALA2-related transcription factor 2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.26e-77AP2 family protein