PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009635
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 428aa    MW: 47311 Da    PI: 5.3844
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55334970PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-21780PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.7e-14952146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg ++ +E+ l++++    G++ W+ Ia++++ gRt++++k++w++
        Pgl009635  9 RGVFSHQEERLIINLQSIIGNR-WSQIAAHIP-GRTDNEIKNYWNS 52
                     899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-13261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-21259IPR009057Homeodomain-like
PROSITE profilePS5129423.083458IPR017930Myb domain
SMARTSM007177.4E-14856IPR001005SANT/Myb domain
PfamPF002492.2E-12952IPR001005SANT/Myb domain
CDDcd001671.48E-91251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
XYLRPGLKRG VFSHQEERLI INLQSIIGNR WSQIAAHIPG RTDNEIKNYW NSTIKRKLKL  60
KHHLSSSTTN CNTNDKSNIH SQSDRISKTN SVFSRANYAL TSSDSSQPYL DAMPEGCQTA  120
NNTLNVVTPG ENQFRVPGVL ELKQEQVQDQ SDEINQLVSY FETWINDTST HTHQSVSSHE  180
AFISPSLQAQ GLHTYNTAKS STCDELIIDA CSTTVQPLEA SASANYSLVS TGITIPAVFG  240
RECLKAKNEN DGWTTSHSYS SADDWSHVVD PGAYITHEAG ISIVEDYKSL YEKNTHQSWP  300
LLSFRSQFGE PEIKCPRGQS NGFKAADDCK HSLDFIYDVN LGIPKYIGNC SRQKSYQLPQ  360
IDGGEGDFKI ISHEEPKANP TPTILAGGSA PLEIECKGVA GQVTVWVDDD IYSLSTAAAS  420
DLDEIYFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1425852108B-MYB
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.313310.0stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.13e-23myb domain protein 46