PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009637
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 428aa    MW: 46887.1 Da    PI: 6.3223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55334272PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-47289PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.5e-06177198223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C +Cgk F+r  n + H+r H
  Pgl009637 177 FCDICGKGFRRDANVRMHMRAH 198
                6*******************99 PP
2zf-C2H212.20.00054270291122
                EEETTTTEEESSHHHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                y+C++C+k Fs   +Lk+H + 
  Pgl009637 270 YTCHKCNKQFSVVGDLKTHGKH 291
                9******************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.24E-6175198No hitNo description
PROSITE profilePS5015711.863176203IPR007087Zinc finger, C2H2
SMARTSM003550.013176198IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.5E-6178204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035574232265IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.24E-6265289No hitNo description
SMARTSM0035518270294IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868270296IPR007087Zinc finger, C2H2
PROSITE patternPS000280272294IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MAAGLSSGAQ AQTNTNLLAQ AQTDTNLLLA NLSVLQQKAQ QLEAVVQEGH HDQPASGVIS  60
SILYELIVTA ASVLFSVQNR GIANPESAEV QPVPDTAACV EIQAENRPPP VGVGFGKPPN  120
PNGASDVGFA GGIDLQDEKS PVDIKAEGEE EEASPDDRFY EIIEINEDDI LAEHTHFCDI  180
CGKGFRRDAN VRMHMRAHGD EYKTNQALMS RPPDQANKLP AASSSSPTAR RYSCPFERCR  240
RNKNHRNFLP LKSITSLRNH YKRSHCPKMY TCHKCNKQFS VVGDLKTHGK HCGHNPWRCS  300
CGTTFTRKDK LFGHVALFQG HKPLLPDHEL ARPPAPKRHK ATSSGRATTA QSAGDDDDGN  360
LTELLAGDLA DIADNKFQGY GAGDDDDLFF GPKVIQMGHR QNEVAIENRF TESDFWADFS  420
GEFSDACR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.168500.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A9S20.0D5A9S2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.22e-78C2H2 family protein