PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009757
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 410aa    MW: 44887.8 Da    PI: 5.485
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55336715PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-24942PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-17957148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l++ v+++G+g +W + +r+ g++R++k+c++rw++yl
        Pgl009757  9 RGPWSPEEDTILKNFVEKHGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 57
                     89*********************************************97 PP
2Myb_DNA-binding39.71.1e-1264106246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
        Pgl009757  64 GDFSEEEDSIICSLYTSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 106
                      689******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.798457IPR017930Myb domain
SuperFamilySSF466891.38E-276104IPR009057Homeodomain-like
SMARTSM007178.7E-13859IPR001005SANT/Myb domain
PfamPF002491.5E-15957IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-231064IPR009057Homeodomain-like
CDDcd001678.38E-101157No hitNo description
PROSITE profilePS5129422.34558112IPR017930Myb domain
SMARTSM007174.8E-1162110IPR001005SANT/Myb domain
PfamPF002491.3E-1064106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2365112IPR009057Homeodomain-like
CDDcd001671.08E-766108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
LLRQANVKRG PWSPEEDTIL KNFVEKHGTG GNWIALPRKA GLKRCGKSCR LRWLNYLRPD  60
IKHGDFSEEE DSIICSLYTS IGSRWSIIAA QLPGRTDNDI KNYWNTRLKK KLLGKCTKDN  120
DNQQIRRLLA KEAAKGAGIR RPYNGDHISS ETAAMSASNT RSSSESLTEP ATGANAMNSP  180
YDALETGNVP GSSSSESQTV GFNATHGTNT HYYEQGFKQI MSQTDQYSTL TSMLMRLESN  240
ESDCSTDNIP SLGIDTIPNE VPFYAPTAMN VKAEAMERPS SDPQLNQACN SMPALWESCT  300
SNSTSGGKNY QFSTLMNEDT GNFSYGLSAE MDELILYRNH ASNGSILQVK EEPDYSTAAA  360
YWASQLAEPA KASGFTATIC PNYSYILPSS EGGIGTGTTA QGLFQEGIIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2491127108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.257450.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LKH90.0B8LKH9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-67myb domain protein 36