PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009779
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 408aa    MW: 45358.4 Da    PI: 6.3424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55336924PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-46549PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-13213262154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +r+ h + Er+RR+ +N+ fe+ r+llP++     +K +K++++ + ++YI+ L
  Pgl009779 213 QREIHIQSERQRRKGMNHLFERMRSLLPNP----TQKTDKSTTVSEIINYIQAL 262
                6899*************************9....79****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-13212276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.88E-12212267No hitNo description
SuperFamilySSF474596.41E-15212272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.224212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10218268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00183334397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLNNMLHFQS QLAAGPKLEP LSTVNHPDDP LRSVLNLSSS YQSPWMNPSC FSSPESVPFD  60
EKALELSEMD TLVHQMGDIE SWGNLDQVHG CVRPLNAASM QACSIVSDPQ LEILNVFLKK  120
HNPAEDVHVN LNPDSDFLPR VRSANVLQMD AVVQQDAFGS ILSDEQEPME NKSKDHMLKV  180
PAKRSSGTRP TQLRPTKRGA AAAPQQDVSG ISQREIHIQS ERQRRKGMNH LFERMRSLLP  240
NPTQKTDKST TVSEIINYIQ ALHQNLEDLN KKRAKMLPSP RGGTVHVKTE PTSAESIQSE  300
CTGSEDSLPV SSEEECTRQT PHVTLHFNGN DIYVTVSCLN KANLLAAIIF VVEDHNLQVI  360
SANFSATETV AFNCLHVKAL ETPDVVTREA LKCALQKFVC SYTQICFK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.257350.0stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.32e-12bHLH family protein