PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl009833

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 400aa MW: 43866.4 Da PI: 6.9593

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55344145	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-15972	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.4	1.5e-33	14	68	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtp+LH+rFvea++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Pgl009833 14 KQRLRWTPDLHDRFVEAISQLGGADRATPKGVLKVMGVQGLTIYHVKSHLQKYRL 68 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.988	11	71	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-32	12	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.45E-17	13	68	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-25	14	69	IPR006447	Myb domain, plants
Pfam	PF00249	7.6E-9	16	67	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-23	100	145	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
XGSPVTSGGS GSAKQRLRWT PDLHDRFVEA ISQLGGADRA TPKGVLKVMG VQGLTIYHVK 60 SHLQKYRLAK YIPESLEGGK SDKKKGNEIV SNLEATSGTQ IAEALQMQME VQKRLHEQLE 120 VQRQLQLRIE AQGRYLQKII EEQQKISTAK PETSSFPETS APRYGEPCEI TAKAFPDSES 180 PGKTGRHRQD GNAVMPPADI AQNDQSAGIA YPRDEPQLQT SSYAYRVSDG MPCSDNLEFG 240 SPSKRSRLNN DTGQPKQENL SSQPHDQQQT LPMSYSSQTS HLKVEELPGS IYQNRVAGLV 300 GQIESTRPSQ STADLHAQQL PGKLPRNNLD HISHAQDFYR PLCAKNASDS IRFISPGSQI 360 QVPASNLPAP SQDEFSSALD GHDGCHNVSS SQASLFEPWP

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

XGSPVTSGGS GSAKQRLRWT PDLHDRFVEA ISQLGGADRA TPKGVLKVMG VQGLTIYHVK  60
SHLQKYRLAK YIPESLEGGK SDKKKGNEIV SNLEATSGTQ IAEALQMQME VQKRLHEQLE  120
VQRQLQLRIE AQGRYLQKII EEQQKISTAK PETSSFPETS APRYGEPCEI TAKAFPDSES  180
PGKTGRHRQD GNAVMPPADI AQNDQSAGIA YPRDEPQLQT SSYAYRVSDG MPCSDNLEFG  240
SPSKRSRLNN DTGQPKQENL SSQPHDQQQT LPMSYSSQTS HLKVEELPGS IYQNRVAGLV  300
GQIESTRPSQ STADLHAQQL PGKLPRNNLD HISHAQDFYR PLCAKNASDS IRFISPGSQI  360
QVPASNLPAP SQDEFSSALD GHDGCHNVSS SQASLFEPWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-25	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-25	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-25	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-25	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024360639.1	2e-73	protein PHOSPHATE STARVATION RESPONSE 1-like
TrEMBL	A0A2K1KZM9	4e-72	A0A2K1KZM9_PHYPA; Uncharacterized protein
STRING	PP1S226_24V6.1	8e-73	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-55	G2-like family protein