PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl009873

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 394aa MW: 42947.6 Da PI: 6.9609

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55339050	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-14512	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.3e-09	218	266	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Pgl009873 218 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 266 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-17	213	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.15E-10	213	270	No hit	No description
PROSITE profile	PS50888	15.485	215	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-17	216	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-6	218	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-10	221	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
XSDNGFAERA ARLSFFGVGG GPLNLSEPAS APFHRSVIDN SAMSRIPRPN MAELTKVSDT 60 SLSKEEVCAA ETGVRKAGRL SRSSTPGLGT SGNESDDAEV STAHEESSSS DQITSEAAPN 120 AFNGRKRKQM QKDKAKDFAS LQAEKDTQST ESDGLKGMKY KVVEGVKEKD DVKYKVEQNA 180 SAKTGEGSPK QGKDNIQNSE QPKEDYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQD 240 LVPGCSKVTG KAVMLDEIIN YVQSLQRQVE VLSMKLAAVN PRMDFNIEGI LAKDMLQSPT 300 MVFASDTSTS YPQLHQPQQG LVQVGTEGHG IVNQAEALRR TINAQIACID GYGDVNAQLS 360 HVWDNELQSV VQMGFVQNNH TPLTSQGNSD KLKT

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

XSDNGFAERA ARLSFFGVGG GPLNLSEPAS APFHRSVIDN SAMSRIPRPN MAELTKVSDT  60
SLSKEEVCAA ETGVRKAGRL SRSSTPGLGT SGNESDDAEV STAHEESSSS DQITSEAAPN  120
AFNGRKRKQM QKDKAKDFAS LQAEKDTQST ESDGLKGMKY KVVEGVKEKD DVKYKVEQNA  180
SAKTGEGSPK QGKDNIQNSE QPKEDYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQD  240
LVPGCSKVTG KAVMLDEIIN YVQSLQRQVE VLSMKLAAVN PRMDFNIEGI LAKDMLQSPT  300
MVFASDTSTS YPQLHQPQQG LVQVGTEGHG IVNQAEALRR TINAQIACID GYGDVNAQLS  360
HVWDNELQSV VQMGFVQNNH TPLTSQGNSD KLKT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006848450.1	1e-102	transcription factor bHLH78
TrEMBL	B8LLM2	1e-139	B8LLM2_PICSI; Uncharacterized protein
STRING	ERN10031	1e-102	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	2e-67	bHLH family protein