PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009963
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 383aa    MW: 43057.6 Da    PI: 10.4688
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55340802PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-19795PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.7e-09271319348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g+W+ I r       +Rt  ++k++w+++l
        Pgl009963 271 AWTLSEVMKLVEGVSRCGAGRWSEIKRLAFsayGHRTSVDLKDKWRNLL 319
                      7***************************999999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.977264323IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-12265323IPR009057Homeodomain-like
SuperFamilySSF466893.59E-16266323IPR009057Homeodomain-like
SMARTSM007171.4E-8268321IPR001005SANT/Myb domain
CDDcd116601.03E-18270320No hitNo description
PfamPF002498.1E-7271319IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
XVGHGMRAGK RLRKPKAEYG ENEVVVGAER MARKTMRKPK SEYIDYDEDF DVEKTAGKRV  60
RKPKVEYGEY DEVLGSEKTA GKRMRKPTRR YIEELSEEEP RAYSGRTVPA VRDSGHGHSP  120
LKSRIRPPFL NGVEGMALVT RQDSLGGSGI QVPFVSRVRR GRPRKNCTSL LKYNPNGMAA  180
KLVKKALSVR AARYDGDGAD MKWRTRVPSE PVEQSVDENS QNDENMLLAV TTEDQSISDP  240
LDYDMEEDNS DDYVATVPTA KGGTRRKHHR AWTLSEVMKL VEGVSRCGAG RWSEIKRLAF  300
SAYGHRTSVD LKDKWRNLLR ASYAQLQSNK EGRSQRKHAS VPIPAPILVR VRELASMQSR  360
SVCTPNSSSV SRSGRTVHKK LPV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164RRGRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.29540.0root| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849623.11e-121uncharacterized protein LOC18439394 isoform X1
RefseqXP_011625298.11e-121uncharacterized protein LOC18439394 isoform X1
RefseqXP_020526080.11e-121uncharacterized protein LOC18439394 isoform X1
RefseqXP_020526081.11e-121uncharacterized protein LOC18439394 isoform X1
RefseqXP_020526082.11e-122uncharacterized protein LOC18439394 isoform X2
TrEMBLW1PTQ91e-120W1PTQ9_AMBTC; Uncharacterized protein
STRINGERN112041e-121(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.25e-62TRF-like 6