PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009970
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 383aa    MW: 41945.1 Da    PI: 7.1973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55332647PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-5028PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-122162561055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Pgl009970 216 QRRRNRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKKLQ 256
                8*******************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.608206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-14212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-16213264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.53E-13216260No hitNo description
PfamPF000105.9E-10216256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAHKCLEPSF LVHNPVLWDD EDALNRNYNY NYYTDLWGGL PLSSSVATTA RTSAEDSRPE  60
VVAVSEALES DYGRLNNNNN NNVSADTQLS CETAATSSSG GSMSSPSNGN KVIKSSKKKV  120
LMGTKDIECQ SQKAQEDSGE NFKQCSTGTS SSKRSRAAEV HNLSEKARLP SGSLSLVIAA  180
DALGYPVSGT AFDCYTSFLF QCNYSELDVC RLCATQRRRN RINEKMKALQ NLIPNSNKTD  240
KASMLDEAIE YLKKLQLQVQ MLSARSGIDI SSMRWLAQMP HLQIQQMPKA CMTTDQHAGV  300
SISMPVGSGL MNTNQGSEKR PLPLHDLYIS GALGNTAIPI NLPSARIDDH QSCKMDRPQG  360
HFTLPQLPTT TQEVHSALSL QEK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.123430.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NSU40.0A9NSU4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-24phytochrome interacting factor 3