PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010000
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 379aa    MW: 41644.4 Da    PI: 7.8194
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55337343PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-21185PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-06141165123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                +kC    C+k+F+++ +Lk H +tH
  Pgl010000 141 FKCAygGCDKTFKNPQTLKMHHKTH 165
                899999******************9 PP
2zf-C2H212.40.00049199217220
                EETTTTEEESSHHHHHHHH CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                +Cp C ++F   ++L+rH 
  Pgl010000 199 RCPVCRRTFVGLYELRRHF 217
                8*****************6 PP
3zf-C2H210.60.0018228250123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y C +Cgk+F    +L+ H +++
  Pgl010000 228 YGCRKCGKRFYIEVDLRDHEKLC 250
                67*****************9987 PP
4zf-C2H211.30.0011257275523
                TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                +Cg+ F  k nL+ H +tH
  Pgl010000 257 KCGMKFAFKCNLVAHKKTH 275
                7*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.66E-7137166No hitNo description
Gene3DG3DSA:3.30.160.602.9E-8139168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.1E-4141165IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.198141170IPR007087Zinc finger, C2H2
PROSITE patternPS000280143165IPR007087Zinc finger, C2H2
SuperFamilySSF576676.48E-7197248No hitNo description
PROSITE patternPS000280198221IPR007087Zinc finger, C2H2
SMARTSM003550.23198221IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.1E-4224248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035567228248IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078228249IPR007087Zinc finger, C2H2
SMARTSM00355110254275IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
ILQDDHSASP FEGLCHGHGH GGFSAAAGAF NAPTMHPNLV STLKNVISQQ NLVDDLHFLH  60
TPHHGFEDAG LASDDGFLNY QTEAGFQPPA EQQNNNNDDN KKKQAQQKNR RSPKLGGDEE  120
DREDRQIATV SVDLIQNRRP FKCAYGGCDK TFKNPQTLKM HHKTHYTDDA AEKRLGEQFL  180
NNNTTGNCRA GHNKKIPCRC PVCRRTFVGL YELRRHFGRK HSEGEKMYGC RKCGKRFYIE  240
VDLRDHEKLC GEPIECKCGM KFAFKCNLVA HKKTHPECQD SSHSPPPLLL PNEDSCSSSS  300
SSSYRQIHPH PTSLPVASVA AFSEDTSSAP ASSSSPSSSS SAAASSMALM VSCGVKLEDI  360
SGFPRAITPS ALLGQEPRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.223990.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358686.12e-83zinc finger protein 184-like
TrEMBLB8LQV80.0B8LQV8_PICSI; Uncharacterized protein
STRINGPP1S191_100V6.19e-83(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.14e-12indeterminate(ID)-domain 2