PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010017
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 377aa    MW: 42076.1 Da    PI: 5.366
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55334104PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-15475PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.5e-1688131247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g  +++E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
        Pgl010017  88 GGISPDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTC 131
                      5569*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-116394IPR009057Homeodomain-like
SuperFamilySSF466894.18E-1967136IPR009057Homeodomain-like
PROSITE profilePS500904.0776881IPR017877Myb-like domain
PROSITE profilePS5129425.33882136IPR017930Myb domain
SMARTSM007179.3E-1586134IPR001005SANT/Myb domain
PfamPF002492.6E-1489131IPR001005SANT/Myb domain
CDDcd001679.60E-1291130No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2095132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
XEAITVSFCC SIVTDEESPR WLDLLAARKK GSTAGPGRRR RISFFANTFE FMAMVDGELF  60
PKKAGLKRCG KSCRLRWLNY LRPDIKRGGI SPDEEELIIR LHRLLGNRWS LIAGRLPGRT  120
DNEIKNYWNT CLSKKLLLSM TKSQSKVTKN VKSTSKSSPV QNRVFKTTPV KVTTAVRLSE  180
TIRPKGSMNG YGCSNRSSDE AFKLCNAKET TNSSKSWCDL LGNDTEGRIS TSSMSLALER  240
SPNSYYFGAD AATLADSLLD LNELSSPDCS LLSPPSNCSA DFGLQDFCGE PVTLTAEANE  300
FEVVSSDQSI MQRDNGFTVL DDQGIEEFYD HTQPLDWIHE PDYIEKSSPQ ALSFLLLESE  360
DEREEKLGDH TQIPDVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-196813640108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9110.0A0A167V911_PICAB; Transcription factor MYB31
TrEMBLA9NSF00.0A9NSF0_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-30myb domain protein 5