PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl010118

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 368aa MW: 42289.7 Da PI: 7.7515

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-175a-Picea_glauca-18864	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.2	2.9e-08	185	229	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR ++++ f+ L +llP + K +K ++L + +Y+++L Pgl010118 185 HMIAERNRRGKLKHHFSLLHSLLPYN-----SKRDKYSVLANTFKYMSEL 229 7899******************98.....7*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-13	180	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.176	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-11	184	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.94E-6	184	230	No hit	No description
Pfam	PF00010	5.0E-6	185	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-6	186	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
XTDRDTFGTK VLQCATSWRT TDPGAYMMAS SGSGLMIQPN GKNSTTRNIN ADSMSIMDEV 60 LFEHLPLYNT AETSWYSSSS EDMETFYPLD RCNISNGHSH PQSFIVANNI ISAPQSSMLY 120 RQSAFDSYLR SNTHSVYVKN GRENLMKRCF KFLRKIEAQK LNQAANIQEQ HEFDVSLQNK 180 AAFHHMIAER NRRGKLKHHF SLLHSLLPYN SKRDKYSVLA NTFKYMSELK LRVDELEQRN 240 HALEESLRIN ISKKGGSTSF DLRLEENQAT LLYSSDEVVL EQSKEIPNHV DMRINVQIDP 300 LSSPTSLMIV LLERLRELQL ELVSVQSNVQ PFKLEVRLLI TVIKGDLLES SRWENVVQVV 360 RRTFSVNE

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

XTDRDTFGTK VLQCATSWRT TDPGAYMMAS SGSGLMIQPN GKNSTTRNIN ADSMSIMDEV  60
LFEHLPLYNT AETSWYSSSS EDMETFYPLD RCNISNGHSH PQSFIVANNI ISAPQSSMLY  120
RQSAFDSYLR SNTHSVYVKN GRENLMKRCF KFLRKIEAQK LNQAANIQEQ HEFDVSLQNK  180
AAFHHMIAER NRRGKLKHHF SLLHSLLPYN SKRDKYSVLA NTFKYMSELK LRVDELEQRN  240
HALEESLRIN ISKKGGSTSF DLRLEENQAT LLYSSDEVVL EQSKEIPNHV DMRINVQIDP  300
LSSPTSLMIV LLERLRELQL ELVSVQSNVQ PFKLEVRLLI TVIKGDLLES SRWENVVQVV  360
RRTFSVNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	4e-07	bHLH family protein