PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010162
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 364aa    MW: 40400.4 Da    PI: 4.6089
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-149266PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-194695255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +k+++g
  Pgl010162 46 VYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEAKRIRG 95
               69*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.61746103IPR001471AP2/ERF domain
SMARTSM003805.9E-3446109IPR001471AP2/ERF domain
PfamPF008471.2E-124695IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2246104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-3146104IPR001471AP2/ERF domain
PRINTSPR003671.1E-114758IPR001471AP2/ERF domain
CDDcd000187.62E-3447105No hitNo description
PRINTSPR003671.1E-116985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
XKNKPSKGFV ESKQEFSSGG GNEAIPPLKD FEEPVAKSAG RKRKNVYRGI RQRPWGKWAA  60
EIRDPRKGVR VWLGTFNTAE EAARAYDAEA KRIRGKKAKL NFADDSCFAN LGSNKKVPGK  120
INKKVKSSSK DVCRSDVPIY GYDDMEYGDL EFSKPGAPFQ SNSNASTVQS SEHSNLSQTL  180
QKSCSCEICS YNYSEVSNLM PPAYGDAVNF EQVKSSQPAG YFDFDHSSMS FEGAHFPWAY  240
DTKTPEILFV CEDANEFTFV DIKPQVDDVV KDGTVDTPIE VDGGTGGFFK TEDNNVELEF  300
FDLESYFGLT EDPNFNATVN QSIEDAGHAV GFFPDVQGSM ESWLYDDLPL SGLVFQNSFS  360
SCFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2247102359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.16720.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW5RX166e-73W5RX16_PINMU; Ethylene responsive element binding protein (Fragment)
TrEMBLW5RX286e-73W5RX28_PINSY; Ethylene responsive element binding protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.19e-28ethylene-responsive element binding protein