PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010181
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 363aa    MW: 40405.5 Da    PI: 7.0695
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55338196PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-23154PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12.1e-29161219259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YYrC+s  gCp++k+vers++dp+ ++itY+ eHnh 
  Pgl010181 161 SDLWAWRKYGQKPIKGSPYPRGYYRCSSCkGCPARKQVERSHTDPTKLVITYTAEHNHA 219
                699***********************9988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.135155221IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-29158221IPR003657WRKY domain
SuperFamilySSF1182905.75E-25159221IPR003657WRKY domain
SMARTSM007744.0E-33160220IPR003657WRKY domain
PfamPF031061.5E-24162218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
FESLDHYYHH VAQKVSWSYG TVGSSLSAEG KAEGKDQTHD LIMPTTSTTS SNQEEQASGR  60
IRFDVVRPRH ILSSSPPRAV HVKSPARSPT RQDDPSAKTP DSEADCSPSS PIRTESTAEK  120
IDSNKTTASR TNRRRNQQRR TVCIPATEGS WNKPGGGGVP SDLWAWRKYG QKPIKGSPYP  180
RGYYRCSSCK GCPARKQVER SHTDPTKLVI TYTAEHNHAW PTSNPRNGLA LTGSSTSTHK  240
DMMALVVPHS PQKSDVPAAK GSNPASPTTD KIEQEKPRSE PATDSLDFNV IEETMDYMEE  300
DHDQTAGLHV LKSNHMHYDD LFADLGELKD FARYFADYKS DEETGSTIVD PYNLFNWSSF  360
FLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-19139222680Disease resistance protein RRS1
5w3x_D1e-19139222680Disease resistance protein RRS1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.220170.0needle| stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-41WRKY DNA-binding protein 35