PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010183
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 363aa    MW: 40467.5 Da    PI: 6.8313
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55334657PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-34868PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053185207123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp C++ F++   L  H rtH
  Pgl010183 185 HECPVCHRNFPSGQALGGHKRTH 207
                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.7E-8115140IPR007087Zinc finger, C2H2
SMARTSM003551115138IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325115143IPR007087Zinc finger, C2H2
PROSITE patternPS000280117138IPR007087Zinc finger, C2H2
SuperFamilySSF576675.12E-5183209No hitNo description
PfamPF139129.1E-13184208IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.014185212IPR007087Zinc finger, C2H2
SMARTSM003550.1185207IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
KGKRSRRSRN SLSLIPKSEI AAWQQGDRDP EEEEEEEDEQ EMAARCLMML LSDGIDSQSH  60
SPTTTSSSES LAPTTLHPIR RRIKKPKRLD AGAADSPYSP EWDVDFKQEM MMRFYACKSC  120
NKKFSSFQAL GGHRASCHYK SKSVFPRLQT DEGFKEEAAH FSINGPSVET YKQSLCTEVK  180
KVRVHECPVC HRNFPSGQAL GGHKRTHSTP PATTIHTHTS LSTTEQQHFS PPRRTETLDL  240
NMPAEDANDC VQMQHSSAVS DNLGGELLDS TVGPLMTTNL YLIIPLNLGG RRAISLVMWL  300
ERMKQIVNWG ATVDLSEAEI WAANEPVLRE DEADSKLRSN SGFVRGPDLG CKPAGLPFIN  360
TVN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.313820.0stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-20C2H2 family protein